PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06019.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 300aa    MW: 33172.9 Da    PI: 7.8047
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06019.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260384.6e-12860152
         DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpee 52
                   +C+aCk+lrr  +++C la yfp +  p++f ++  lF+ snv++ll+  +++
  Jcr4S06019.20  8 PCSACKILRRPSTDKCYLASYFPPSAePHNFTVIDSLFRHSNVVELLQPSQTS 60
                   7*********************765449*******************986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.5527110IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-10860IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-474121IPR004883Lateral organ boundaries, LOB
SMARTSM004396.6E-19123237IPR001025Bromo adjacent homology (BAH) domain
PROSITE profilePS5103816.672123237IPR001025Bromo adjacent homology (BAH) domain
PfamPF014261.1E-7124234IPR001025Bromo adjacent homology (BAH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
PSAAVIGPCS ACKILRRPST DKCYLASYFP PSAEPHNFTV IDSLFRHSNV VELLQPSQTS  60
SSRSGLPSAA FLGSCAARKI LRRPCNDKCY SASYSTPSAE SHNFTVDSVL GLSNVEFFMK  120
EGLKISVGDC DVFKPPQEDS PPFVGIIRSL IVGEVLKLCV NWLYRPAELK LRKGIPLEAA  180
PNEVFYSFHK DEILAASLLH PCKVSFLPKG VELPSRICSF VCRRVYDTRY KCFFWLTDQD  240
YINERQEEVD QLLFKTCIEM HSSVQLGGHF PKPVNGSTST SQLKLGSDDV HSGASSFAST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534283.11e-163uncharacterized protein LOC110009289 isoform X1
TrEMBLA0A067KUT91e-161A0A067KUT9_JATCU; Uncharacterized protein
STRINGGorai.008G297300.13e-87(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.13e-12LOB domain-containing protein 11