PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06019.10
Common NameJCGZ_03508, LOC105632364
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 436aa    MW: 47661 Da    PI: 8.2777
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06019.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26047.74.3e-1576153173
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeer....edamsslvyeAearardPv 73 
                    +CaaCk+lr+ C+++C +a yfp +  p++f+++  lFG snv+++l++  ++        +++ +   ++ r+ +P 
  Jcr4S06019.10  76 PCAACKILRQPCTDKCHVAAYFPPSVePHNFNVIDSLFGHSNVVEFLQQNGNSSSyvplLLLLKNISKDGNQRQANPS 153
                    7*********************775449********************975544323334455566666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.14875180IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-1376125IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:1.20.930.107.6E-23309411IPR017923Transcription factor IIS, N-terminal
SuperFamilySSF476764.19E-16310413IPR017923Transcription factor IIS, N-terminal
SMARTSM005097.4E-11328407IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
PROSITE profilePS5131919.216330408IPR017923Transcription factor IIS, N-terminal
CDDcd001839.59E-14333406No hitNo description
PfamPF087111.2E-11358405IPR017923Transcription factor IIS, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAKNPFVFPS TFSNSQSLTP SSSSSPPPSF NSYSSCPSSD PSLNSPFLSS HQSLPPPLSQ  60
NSSSPFGLPS AAVIGPCAAC KILRQPCTDK CHVAAYFPPS VEPHNFNVID SLFGHSNVVE  120
FLQQNGNSSS YVPLLLLLKN ISKDGNQRQA NPSKNSNDVR YGSNININGQ LMLGVSDNLK  180
AHSYSSSSKP LMMFAINNLG TITSPANQLR GNNDLDMPAD MEDESLNSNV DPSGKDDVDS  240
KMDDGDSVDS GPESVWKSEI AKFTEKGGLV DSEGVEKLLQ LMKPEKNGKK IDLVGRSVLA  300
GVVAATDKFD CLGRFVQLRG VLVFDEWLQD VLKGNIADGR GSKDSAKSIE EFLDVVFRAL  360
DKLPIDLNAL RMCTIGKSVN RLRTHKKLEI QKKARTLVDK WKKRVEAEID RDHGFNLPVT  420
WPRRTQLTRL ARLPPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070123.10.0uncharacterized protein LOC105632364
TrEMBLA0A067KUZ70.0A0A067KUZ7_JATCU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-14LOB domain-containing protein 11
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]