PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S06012.20

Common Name

JCGZ_22911, LOC105645405

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GeBP

Protein Properties

Length: 370aa MW: 41697.3 Da PI: 4.6673

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S06012.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119.2	2.2e-37	140	234	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +qrlwse+Dei++L Gl ++k ++g++p++d+ af++f+kks++++vsk+ql++KirrLKkK++++ +++++g+ p+fsk hd+k+felskk+W+ Jcr4S06012.20 140 IQRLWSEDDEIAILHGLSQYKFEKGADPYADMGAFHDFIKKSLHVDVSKNQLIDKIRRLKKKYQNNLDRSENGEVPVFSKLHDSKSFELSKKVWD 234 79********************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.4E-33	141	234	IPR007592	Protein of unknown function DUF573

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0005829	Cellular Component	cytosol
GO:0009507	Cellular Component	chloroplast
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MPPKRLAENP PPPSDEEGEE EEEEEGSSSD EENDNVVYEQ NDKEEEKDDD DEEEEEKSSL 60 LKKSIVPATP QKSDSATDSD LESTQPSPSP SAFTIKLHKP PPRSFRSLSK RPSEPETPAS 120 NKKSRGGGGD DGETKNKGPI QRLWSEDDEI AILHGLSQYK FEKGADPYAD MGAFHDFIKK 180 SLHVDVSKNQ LIDKIRRLKK KYQNNLDRSE NGEVPVFSKL HDSKSFELSK KVWDENVNQS 240 GKANNNSAAT VAGTSTGVTL ALPSGRGHDL RVRKPFKVLN EEENNGEEKF EEKSEILEEN 300 YPFLKDSFEL LGLSAGLKII LKEKLGLIED GKLKELEVKW KRLKEAELEL FVQRMELVHE 360 QVKLTLDLIK

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MPPKRLAENP PPPSDEEGEE EEEEEGSSSD EENDNVVYEQ NDKEEEKDDD DEEEEEKSSL  60
LKKSIVPATP QKSDSATDSD LESTQPSPSP SAFTIKLHKP PPRSFRSLSK RPSEPETPAS  120
NKKSRGGGGD DGETKNKGPI QRLWSEDDEI AILHGLSQYK FEKGADPYAD MGAFHDFIKK  180
SLHVDVSKNQ LIDKIRRLKK KYQNNLDRSE NGEVPVFSKL HDSKSFELSK KVWDENVNQS  240
GKANNNSAAT VAGTSTGVTL ALPSGRGHDL RVRKPFKVLN EEENNGEEKF EEKSEILEEN  300
YPFLKDSFEL LGLSAGLKII LKEKLGLIED GKLKELEVKW KRLKEAELEL FVQRMELVHE  360
QVKLTLDLIK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012086396.1	0.0	STOREKEEPER protein
TrEMBL	A0A067JPI4	0.0	A0A067JPI4_JATCU; Uncharacterized protein
STRING	cassava4.1_034346m	1e-120	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1831	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	1e-33	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Entrez Gene	105645405

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]