PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05921.20
Common NameJCGZ_13618, LOC105638657
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 302aa    MW: 34272.9 Da    PI: 7.5535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05921.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-1499150155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Jcr4S05921.20  99 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 150
                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-1797166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.55E-1397154No hitNo description
Gene3DG3DSA:4.10.280.107.1E-1497153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.19998149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1199150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-9104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTLEALSSSE FLNFIIYDTI SATPCSNSHD SLETSPLLET SLKPQNHGTS SNSSSLTAQQ  60
RRFRELDAGE WKQSLGVQGR KKRRRKPRVC KNKEEAETQR MTHIAVERNR RKQMNEHLAV  120
LRSLMPESYV QRGDQASIVG GAIEFVKELE HLLQYLEAKK LQLQNGLRGD NDEDGSTDSK  180
FLTPPFSQFF VYPQYTWSQM PNKHTSKTKA AIADIEVTLV ETHANLRILS RKCYRQLSKL  240
VTGFQTLHLT ILHINVTSSE PFVLYSISAK LEEECQLTCV DDIAGAVHQM LRIIEEEAAL  300
CC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17985RKKRRRK
27986RKKRRRKP
38085KKRRRK
499110RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077877.10.0transcription factor bHLH71
SwissprotQ9C7T46e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A067KAC60.0A0A067KAC6_JATCU; Uncharacterized protein
STRINGcassava4.1_012613m1e-160(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]