PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05759.20 | ||||||||
Common Name | JCGZ_02757, LOC105632715 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 609aa MW: 69493.8 Da PI: 6.7942 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.9e-07 | 400 | 441 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE e + ++++G++ Wkt a+ +g + + ++k+ w+ Jcr4S05759.20 400 KRKWTPEEVEFVQKFHEKYGSD-WKTLAEILG--KHRFHVKDTWR 441 579*******************.********9..56777877776 PP | |||||||
2 | Myb_DNA-binding | 21.7 | 4.7e-07 | 451 | 514 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqkyl 48 grW++eE + l d+v++ + +W++I+ +g +Rt+ c ++w+++l Jcr4S05759.20 451 GRWSQEEYQNLFDLVNKDL-RlkaleearkskhgmlrdniCWTAISDQLG-TRTAPTCCLKWYNHL 514 8**************9843.33599*************************.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.8 | 326 | 397 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-4 | 329 | 416 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.969 | 395 | 444 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0056 | 399 | 446 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.59E-8 | 399 | 461 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 7.1E-11 | 403 | 461 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-7 | 417 | 455 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.77 | 445 | 514 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.4E-4 | 449 | 516 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.95E-6 | 452 | 570 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.16E-4 | 452 | 514 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-9 | 456 | 514 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.05 | 516 | 569 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MGTKSVGKKG HEKEKMNNAE EGFCNEDKKN KVQDCGVNDN DFEPSDTEIE AVSIEGGLNN 60 QEIENKKKHK DRKSGQGSAN VESQVMKRVD DGHRISTSEN VPEMINGKEV DQRKKKTKKQ 120 KMHKDAVHDH VIKSATDREE VENGRDHVYV EDPRKERKKK KGQHNVNLES RSTKITAETV 180 NDEINRIEDV SSIDLAENQV GDGKVGAHAC NAADGKDKKK RKQEEIGGVG LINEDVGNES 240 ECLDENIMKM VDHSEKERKK KKKHDGVEGK GGEREQRIGG GVEATDSSEK STPNTAKGVS 300 LSENMEAFPS SDGPSDQETQ KDELVRGKRF SPEEDEMVKV AVLNYIDSHG LGEEGLNMVL 360 HCKKYPEVKN CWKEIGAALS WRPHLSVYYR AHILFQRDKK RKWTPEEVEF VQKFHEKYGS 420 DWKTLAEILG KHRFHVKDTW RRIKLKNRTE GRWSQEEYQN LFDLVNKDLR LKALEEARKS 480 KHGMLRDNIC WTAISDQLGT RTAPTCCLKW YNHLTSPMVA QGEWLDVDDY SLVIELYDLG 540 ACCMEDVDWD SLLEHRSGDV CRKRWSQMVK HIGEHGNKSF ADQVEVLSKR YCADILEARE 600 AHNSKPTLT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 118 | QRKKKTKK |
2 | 256 | 262 | ERKKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012070546.1 | 0.0 | DNA-binding protein REB1 | ||||
Refseq | XP_020534324.1 | 0.0 | DNA-binding protein REB1 | ||||
TrEMBL | A0A067KUF3 | 0.0 | A0A067KUF3_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_002606m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6704 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-128 | MYB_related family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105632715 |
Publications ? help Back to Top | |||
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