PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05759.20
Common NameJCGZ_02757, LOC105632715
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 609aa    MW: 69493.8 Da    PI: 6.7942
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05759.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07400441145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE e   + ++++G++ Wkt a+ +g  + + ++k+ w+
    Jcr4S05759.20 400 KRKWTPEEVEFVQKFHEKYGSD-WKTLAEILG--KHRFHVKDTWR 441
                      579*******************.********9..56777877776 PP

2Myb_DNA-binding21.74.7e-07451514248
                      SSS-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqkyl 48 
                      grW++eE + l d+v++   +                   +W++I+  +g +Rt+  c ++w+++l
    Jcr4S05759.20 451 GRWSQEEYQNLFDLVNKDL-RlkaleearkskhgmlrdniCWTAISDQLG-TRTAPTCCLKWYNHL 514
                      8**************9843.33599*************************.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.8326397IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-4329416IPR009057Homeodomain-like
PROSITE profilePS500906.969395444IPR017877Myb-like domain
SMARTSM007170.0056399446IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-8399461IPR009057Homeodomain-like
PfamPF139217.1E-11403461No hitNo description
Gene3DG3DSA:1.10.10.609.3E-7417455IPR009057Homeodomain-like
PROSITE profilePS500907.77445514IPR017877Myb-like domain
SMARTSM007175.4E-4449516IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-6452570IPR009057Homeodomain-like
CDDcd001678.16E-4452514No hitNo description
Gene3DG3DSA:1.10.10.606.8E-9456514IPR009057Homeodomain-like
PROSITE profilePS500907.05516569IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MGTKSVGKKG HEKEKMNNAE EGFCNEDKKN KVQDCGVNDN DFEPSDTEIE AVSIEGGLNN  60
QEIENKKKHK DRKSGQGSAN VESQVMKRVD DGHRISTSEN VPEMINGKEV DQRKKKTKKQ  120
KMHKDAVHDH VIKSATDREE VENGRDHVYV EDPRKERKKK KGQHNVNLES RSTKITAETV  180
NDEINRIEDV SSIDLAENQV GDGKVGAHAC NAADGKDKKK RKQEEIGGVG LINEDVGNES  240
ECLDENIMKM VDHSEKERKK KKKHDGVEGK GGEREQRIGG GVEATDSSEK STPNTAKGVS  300
LSENMEAFPS SDGPSDQETQ KDELVRGKRF SPEEDEMVKV AVLNYIDSHG LGEEGLNMVL  360
HCKKYPEVKN CWKEIGAALS WRPHLSVYYR AHILFQRDKK RKWTPEEVEF VQKFHEKYGS  420
DWKTLAEILG KHRFHVKDTW RRIKLKNRTE GRWSQEEYQN LFDLVNKDLR LKALEEARKS  480
KHGMLRDNIC WTAISDQLGT RTAPTCCLKW YNHLTSPMVA QGEWLDVDDY SLVIELYDLG  540
ACCMEDVDWD SLLEHRSGDV CRKRWSQMVK HIGEHGNKSF ADQVEVLSKR YCADILEARE  600
AHNSKPTLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111118QRKKKTKK
2256262ERKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070546.10.0DNA-binding protein REB1
RefseqXP_020534324.10.0DNA-binding protein REB1
TrEMBLA0A067KUF30.0A0A067KUF3_JATCU; Uncharacterized protein
STRINGcassava4.1_002606m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-128MYB_related family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]