PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05732.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family G2-like
Protein Properties Length: 370aa    MW: 41292.7 Da    PI: 7.7938
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05732.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.11.9e-283295155
        G2-like  1 kprlrWtpeLHerFveaveqLGGsek.........AtPktilelmkvkgLtlehvkSHLQkYRl 55
                   kprlrWt eLHerFv+av+qLGG++          AtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Jcr4S05732.10 32 KPRLRWTVELHERFVDAVTQLGGPDStylifsipxATPKTIMRVMGVKGLTLYHLKSHLQKFRL 95
                   79*********************9954444444449***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-292996IPR009057Homeodomain-like
SuperFamilySSF466891.29E-133196IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-183296IPR006447Myb domain, plants
PfamPF002498.5E-73493IPR001005SANT/Myb domain
PfamPF143791.9E-24136182IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MFHTKKPSTM NSHDRPMCVQ GDSGLVLTTD PKPRLRWTVE LHERFVDAVT QLGGPDSTYL  60
IFSIPXATPK TIMRVMGVKG LTLYHLKSHL QKFRLGKQPH KEFNDHSIKD APALDLQRSA  120
ASSSAMMGRS MNDNSHMVDA IRMQMEVQRR LHEQLEVQRH LQLRIEAHGK YMQNMLEKAY  180
QTLAGENMAS GSFKSIGNQG VGDHMGGLSF PPFQDLNIYG GDQLDLQHNM DRPPSLDGFM  240
QNSSDNICLG KKRASPYSGS GKSPLIWSDD LRLQDLGSAP TCIGPPDDLF KGDHIQIGPP  300
SMDRSTDLDS ISDIYETKPM LQGDVMGEKK FESSTKLERP SPRRAPLPTD RMSPIINAGS  360
MQQDRNSPFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-163297157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-163297157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-163297157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-163297157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6755624e-61AY675562.1 Populus tomentosa myb family transcription factor-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020541415.10.0myb family transcription factor APL isoform X1
SwissprotQ9SAK51e-117APL_ARATH; Myb family transcription factor APL
TrEMBLA0A067LBR80.0A0A067LBR8_JATCU; Uncharacterized protein
STRINGXP_002523053.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49643252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-111G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]