PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05714.10
Common NameJCGZ_02653, LOC105632562
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 392aa    MW: 43595.7 Da    PI: 9.4279
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05714.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-16114159147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+q+G+ +W++Ia+ +  gR++k+c++rw++ 
    Jcr4S05714.10 114 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 159
                      899*****************************.***********996 PP
2Myb_DNA-binding57.43.3e-18166209146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
    Jcr4S05714.10 166 RRAFTEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 209
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.784109160IPR017930Myb domain
SMARTSM007171.4E-14113162IPR001005SANT/Myb domain
PfamPF002495.2E-16114159IPR001005SANT/Myb domain
SuperFamilySSF466892.58E-28114207IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-26115167IPR009057Homeodomain-like
CDDcd001671.17E-13117158No hitNo description
PROSITE profilePS5129427.671161215IPR017930Myb domain
SMARTSM007172.2E-15165213IPR001005SANT/Myb domain
PfamPF002491.1E-14166208IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-21168214IPR009057Homeodomain-like
CDDcd001671.34E-7177208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0071367Biological Processcellular response to brassinosteroid stimulus
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSLKHLRSNN IGFNGYRDMN FLPPPPSSQL SLSKTNTFGL MGKPETKSPQ MDFQVLGHSM  60
DQQVENRGTK RPNDDGSDGY LVVQNKGLAL HLDEEEEPKN SVSGKNGHTK LCARGHWRPA  120
EDAKLKELVA QYGPQNWNLI AENLEGRSGK SCRLRWFNQL DPRINRRAFT EEEEERLLAA  180
HRLYGNKWAM IARLFPGRTD NAVKNHWHVI MARKHREQSS IYRRRKPSSS SQILLPPTSR  240
GLNVTLHNNA SSESTTLSST IDESASTCTT DLSLTPSSTK APPRLFTRFN PQRYSQMGGY  300
AEKEVAMGLG NGELDKLYRN SSSSSSNSKE MYEIGSMRVV VMGVDQSGQS DSNSEVSATE  360
SVGTNRINPS LSGGDNEKIN MPFIDFLGVG AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-331142147107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00516DAPTransfer from AT5G17800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346320.0KM034632.1 Jatropha curcas clone JcMYB011 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070362.10.0transcription factor MYB56
TrEMBLA0A067KXC60.0A0A067KXC6_JATCU; MYB family protein
STRINGcassava4.1_024606m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-73myb domain protein 56
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]