PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05691.60 | ||||||||
Common Name | JCGZ_12894 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 30376.4 Da PI: 9.7605 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.4 | 7.9e-19 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++v+++G g+W+++ar g++R +k+c++rw +yl Jcr4S05691.60 22 KGPWTAEEDRLLMEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 75 | 119 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Jcr4S05691.60 75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.828 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.95E-30 | 19 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-16 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-17 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-24 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.29E-11 | 24 | 69 | No hit | No description |
SMART | SM00717 | 1.4E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.35 | 74 | 124 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-13 | 75 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.10E-10 | 79 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MSWGVMGGHL GWGGLIEEGW RKGPWTAEED RLLMEYVRLH GEGRWNSVAR LAGLKRNGKS 60 CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF 120 KKKAKLAPEN SEKARTRFLK RQQFQQQQQQ QQQLQQQQQL QLNQLDMKKI MSLLDETENN 180 NSKLAYLPQI RQEMANNLLY PNTTEEHGVL YSMFNAANNG SVPEASNEDI LWDGLWNLDD 240 VHVNFGVTSK AGMHNLVAPF C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 12 | 124 | 17 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034649 | 0.0 | KM034649.1 Jatropha curcas clone JcMYB029 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012077638.1 | 0.0 | myb-related protein 340 | ||||
TrEMBL | A0A067KM40 | 0.0 | A0A067KM40_JATCU; MYB family protein | ||||
STRING | cassava4.1_013947m | 1e-141 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 2e-83 | myb domain protein 79 |
Publications ? help Back to Top | |||
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