PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05571.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARF
Protein Properties Length: 148aa    MW: 16709.5 Da    PI: 10.4917
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05571.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.6e-1118615499
                   EETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3 54 kksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   ++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++++r+
  Jcr4S05571.20 18 GQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 61
                   67899*************************..8899999****997 PP
2Auxin_resp80.73.3e-2786147161
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsG 61 
                    aahaa+t+s F+v+YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++G
  Jcr4S05571.20  86 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYYG 147
                    79********************************87599*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.474162IPR003340B3 DNA binding domain
SuperFamilySSF1019361.24E-141689IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-161875IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-91861IPR003340B3 DNA binding domain
PfamPF065072.3E-2286147IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MFYIILIHLP QIYLDLIGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR  60
ATRPQTVMPS SVLSSDSMHI GLLAAAAHAA ATNSCFTVFY NPRASPSEFV IPLSKYVKAV  120
FHTRVSVGMR FRMLFETEES SVRRYYGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-5518148216346Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592753.12e-84auxin response factor 8-like isoform X4
RefseqXP_021603559.15e-84auxin response factor 8-like isoform X2
RefseqXP_021603560.12e-84auxin response factor 8-like isoform X3
RefseqXP_021647232.19e-85auxin response factor 8-like isoform X2
SwissprotQ0J9513e-75ARFL_ORYSJ; Auxin response factor 12
SwissprotQ258Y53e-75ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A067KWZ22e-82A0A067KWZ2_JATCU; Auxin response factor
TrEMBLA0A2C9WEB54e-83A0A2C9WEB5_MANES; Auxin response factor
TrEMBLA0A2C9WK864e-83A0A2C9WK86_MANES; Auxin response factor
STRINGcassava4.1_001769m4e-83(Manihot esculenta)
STRINGcassava4.1_001923m3e-83(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1916422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.11e-74auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi Y, et al.
    OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
    New Phytol., 2012. 193(1): p. 109-20
    [PMID:21973088]
  3. Shen WJ,Ruan XL,Li XS,Zhao Q,Li HP
    RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
    Arch. Virol., 2012. 157(8): p. 1531-9
    [PMID:22592958]
  4. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  5. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]