PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05562.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 1042aa    MW: 115999 Da    PI: 6.0465
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05562.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-17106164357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    k  ++t+eq+e+Le+l++++++ps  +r++  +++    +++ +q+kvWFqNrR +ek+
  Jcr4S05562.10 106 KYVRYTPEQVEALERLYHECPKPSSIRRQQFIRECpilsNIEPKQIKVWFQNRRCREKQ 164
                    5679*****************************************************97 PP
2START179.91.5e-562504582205
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l +
  Jcr4S05562.10 250 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELLY 344
                    789*******************************************************.8888888888****************9999******* PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++l+a+++l+p Rdf+ +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s
  Jcr4S05562.10 345 MQLYAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYES 440
                    ******************************************9988899*********************************************** PP

                    HHHHHHHHHHHHTXXXXX CS
          START 188 glaegaktwvatlqrqce 205
                    +++ ++kt++a l+++++
  Jcr4S05562.10 441 STVLAQKTTMAGLRQLRQ 458
                    *************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.111101165IPR001356Homeobox domain
SMARTSM003895.7E-14103169IPR001356Homeobox domain
SuperFamilySSF466891.24E-15105169IPR009057Homeodomain-like
CDDcd000863.23E-15106166No hitNo description
PfamPF000464.2E-15107164IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-17108164IPR009057Homeodomain-like
CDDcd146861.56E-6158197No hitNo description
PROSITE profilePS5084825.388240455IPR002913START domain
CDDcd088755.86E-79244460No hitNo description
SMARTSM002343.2E-42249459IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-23249456IPR023393START-like domain
SuperFamilySSF559611.02E-37249460No hitNo description
PfamPF018525.6E-54250458IPR002913START domain
PfamPF086702.7E-9793843IPR013978MEKHLA
PfamPF086703.1E-32888988IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1042 aa     Download sequence    Send to blast
MIVSEAWIGS TVPFWLVKEE ISYLITNQWF MLSCVLGLSN NRQNEDNDVS HLDIAAPVSF  60
LSGILKLLIK PLESYLALRK ERVKLNFKMA MSCKDGKQPA NLDNGKYVRY TPEQVEALER  120
LYHECPKPSS IRRQQFIREC PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQAVNRKLTA  180
MNKLLMEEND RLQKQVSQLV YENGHFRQHT QNTTLATKDT SCESVVTSGQ HHLTPQHPPR  240
DASPAGLLSI AEETLTEFLS KATGTAVEWV QMPGMKPGPD SIGIIAISHG CTGVAARACG  300
LVGLEPTRVA EILKDRPSWF RDCRAVDVLN VLPTANGGTI ELLYMQLYAP TTLAPARDFW  360
LLRYTSVLED GSLVICERSL KNTQNGPSMP PVQHFVRAEM LPSGYLIRPC EGGGSIIHIV  420
DHMDLEPWSV PEVLRPLYES STVLAQKTTM AGLRQLRQIA QEVSQSNVTN WGRRPAALRA  480
LSQRGFNEAL NGFTDEGWSM MGNDGMDDVT ILVNSSPEKL MGLNLSFTNG FPSVSNAVLC  540
AKASMLLQNV PPAILLRFLR EHRSEWADNN IDAYSAAAIK IGPCSLPGAR VGSFGGQVIL  600
PLAHTIEHEE FLEVIKLEGV GHSPEDPIMP RDMFLLQYAQ SFNDNWLSLL CSGMDENAIG  660
TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEASSPN RTLDLASALE IGPAGNKSST  720
EYSANSGCVR SVMTIAFEFA FESHMQEHVA SMARQYVRSI ISSVQRVALA LSPSHLGSHA  780
GLRPPLGTPE AQTLARWICL SYRCYLGVEL LKSSSEGSES VLKTLWHHSD AIMCCSPEGP  840
YYFFSLYFFF LQWILEMEIL KICSDYASYN GVVYVLEIKE IGVFSNCYVF RCEFQALPVF  900
TFANQAGLDM LETTLVALQD ITLEKIFDDH GRKTLCSEFP QIMQQGFACL QGGICLSSMG  960
RPVSYERAVA WKVLNEEENA HCICFILAEL NEGAALLLII QMRLNDIDLK SLYPLKGAPR  1020
VALQFLFAFI FRSGQVLEYD AK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5347160.0KF534716.1 Populus alba x Populus glandulosa HD-ZIPIII mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069098.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A067KXE10.0A0A067KXE1_JATCU; Uncharacterized protein
STRINGXP_002515977.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]