PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05502.10 | ||||||||
Common Name | JCGZ_19646, LOC105643836 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | DBB | ||||||||
Protein Properties | Length: 158aa MW: 17618 Da PI: 5.5528 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24 | 8.2e-08 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC++C ++ H Jcr4S05502.10 4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33 7**************************998 PP | |||||||
2 | zf-B_box | 21.9 | 3.6e-07 | 52 | 93 | 2 | 37 |
zf-B_box 2 eerkCpeHeeke..lqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ + + ++Ce +++ lC +C + H g H Jcr4S05502.10 52 DVPRCDICENAPgiAFFYCEIDGSSLCLQCDMIVHVGgkrtH 93 5789******999999****************9995544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.21 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.0E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.61E-6 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 2.8E-6 | 3 | 41 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-6 | 51 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.52E-4 | 54 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP SDVPRCDICE 60 NAPGIAFFYC EIDGSSLCLQ CDMIVHVGGK RTHGRYLLFR QRVEFPGDKP GHLDELGQQQ 120 LDQNDTRRDQ NQPPILTLRE NKQNHGASSI TMMENNID |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020538783.1 | 1e-112 | B-box zinc finger protein 19 | ||||
Swissprot | Q9SJU5 | 9e-68 | BBX18_ARATH; B-box zinc finger protein 18 | ||||
TrEMBL | A0A067JUK0 | 1e-110 | A0A067JUK0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_016111m | 1e-100 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21320.1 | 4e-70 | DBB family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105643836 |
Publications ? help Back to Top | |||
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