PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05484.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | AP2 | ||||||||
Protein Properties | Length: 718aa MW: 81434.9 Da PI: 8.2166 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.5 | 9e-15 | 168 | 227 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Jcr4S05484.20 168 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 227 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 46.6 | 8.5e-15 | 265 | 314 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Jcr4S05484.20 265 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 314 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-11 | 168 | 227 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-17 | 168 | 237 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.83E-23 | 168 | 237 | No hit | No description |
SMART | SM00380 | 5.8E-30 | 169 | 241 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-15 | 169 | 236 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.256 | 169 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 170 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-18 | 263 | 324 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.27E-24 | 263 | 324 | No hit | No description |
SMART | SM00380 | 8.6E-33 | 264 | 328 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.375 | 264 | 322 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-18 | 264 | 323 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-9 | 265 | 314 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 304 | 324 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS50904 | 43.614 | 535 | 714 | IPR006797 | PRELI/MSF1 domain |
Pfam | PF04707 | 3.6E-47 | 549 | 711 | IPR006797 | PRELI/MSF1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MGSMNSNNWL SFPLSPTHSS LPPHLHTSHP QQFSLGLVTE TMDNPFQNQE WSLVNTQGSS 60 EVPKVADFLG VSKSENQSDL VAFNGLQAND SDYMFQSNSL LPVHNAVVAA STNYEFQENA 120 NNLQSLTLSM GSASGKASTC ETSGDNSTNT VEATAPRRTL DTFGQRTSIY RGVTRHRWTG 180 RYEAHLWDNS CRREGQSRKG RQVYLGGYDK EEKAARAYDL AALKYWGTST TTNFPISNYE 240 KELEEMKHMT RQEKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTEEE 300 AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS ILESNTLPIG GGAAKRLKEA QAIESSRKRE 360 EMIALGSSFQ YGSSSSNNRL QAYSLMQSPF EQPQPLLTLQ NQDISQYTQD TASFNHQNYL 420 QTQLHLHQQS AASSNYLQQS SHQNPQFYNS YIQNNPALLH GLFNMGSSSS IVENNXXXXX 480 XXXXXXXXXX XXXXXXXXXX XXXXXXXXLL LRWIMICRLL AAMAIGVNTK LNSMVRTYKQ 540 EHVYKHPWER VTSASWRKFT DPENKRILSH ILEVDTLNRK LDRESGKLYT TRAVTVHAPG 600 PWFIRKIIGQ EICHCIESTV VDAETHSMQL TSRNISLQKF IEVEEKIRYD PHPDNPSEWT 660 ICRQETSIQI KPLSALASMA EKVEQRCVEK FLQNSAKGRE VMERICKYLE AESRGITL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6i4y_B | 3e-24 | 535 | 717 | 14 | 188 | PRELI domain containing protein 3B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012089962.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT1 isoform X1 | ||||
Swissprot | Q5YGP8 | 0.0 | PLET1_ARATH; AP2-like ethylene-responsive transcription factor PLT1 | ||||
TrEMBL | A0A2K2BA87 | 0.0 | A0A2K2BA87_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_005020m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4942 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20840.1 | 0.0 | AP2 family protein |