PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05421.10
Common NameJCGZ_07476, LOC105637950
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRF
Protein Properties Length: 397aa    MW: 44733.7 Da    PI: 8.573
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05421.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.85e-2577120144
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                    d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Jcr4S05421.10  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 120
                    79***************************************998 PP

2QLQ575.8e-20943236
            QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                   +FTa+Q+q+L++Q+l++Ky++++ P+P++Ll+ i+
  Jcr4S05421.10  9 PFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIK 43
                   8******************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.3E-11844IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.944944IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.1E-15942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9877121IPR014977WRC domain
PfamPF088791.4E-2078120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MMSETAKFPF TASQWQELEH QALIFKYMVS GIPIPSDLLF TIKRSCLDSP LSSKLFPRQP  60
SHIGWSCFQM GLGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE  120
VPTQTVTANP SITTQTISSI NKNHSSTTTL LGNTPLPSHS LSLLSSETHH QNHHLHYSAP  180
YHAHLNNHQF LSSSSRPPGN IGLSHQDNST PLLLDSAPGS GSLTNTADYR KAYGMKEEVD  240
EHAFFSSEPS GSMRSLSGGS SLDDAWQFTP LTMNSSSTSS SNQRGLSSLN NEYSYLQLHS  300
LSDHDSTPKQ QKMYHQRSYL LGNEMKCQPP MKVEREEQPQ KTVHRFFDEW PPKNKDSWLD  360
LDDKSPNSTS VSTTRLSISI PSSHDFPIFN SRTHNDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098461e-55AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077032.10.0growth-regulating factor 1 isoform X2
TrEMBLA0A067KNN50.0A0A067KNN5_JATCU; Uncharacterized protein
STRINGPOPTR_0018s07140.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-55growth-regulating factor 5
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]