PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05414.40
Common NameJCGZ_18450
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 298aa    MW: 33419.3 Da    PI: 4.6189
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05414.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.45.2e-151755442
                   -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
         SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                   en+ ++ v+f+kRr+g++ KA EL +LCda+v v++ s+
  Jcr4S05414.40 17 ENEKQKAVSFTKRRQGLFNKAGELFTLCDAKVVVLVSSP 55
                   8999********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-14669IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.484658IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-8828IPR002100Transcription factor, MADS-box
CDDcd002662.59E-20978No hitNo description
SuperFamilySSF554555.49E-18985IPR002100Transcription factor, MADS-box
PfamPF003191.4E-141759IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-82843IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-84364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MPSMASKTRK IPMQKRENEK QKAVSFTKRR QGLFNKAGEL FTLCDAKVVV LVSSPCSKPK  60
RKFYSIGNPS VTAVLDAFLQ NRIPDAVDDG AKQSALSLLD EIDQLELEIE NIKTLKNVDF  120
EFFQESKSVE ELQELVDGLE KLVETTKSKP LADVVSNNTS PIRNVVFDES DIVALQGMDF  180
DYRTNYVDNV QSGNIFLSPP ASAASCFKYN EVLLKEKEAD SNRIGDFDFV NYFGNNDKSN  240
SRLGDFNLSH EAVDHANNNV SLSDYSDAFG IFDGNAHPHV IYNEHGDSSL ADDRLWFY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081579.10.0MADS-box protein FLOWERING LOCUS C
TrEMBLA0A067KCA90.0A0A067KCA9_JATCU; Uncharacterized protein
STRINGXP_002532176.11e-56(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14582714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-16AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]