PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05387.10 | ||||||||
Common Name | JCGZ_06687 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 127aa MW: 13729.3 Da PI: 6.2071 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 47.3 | 5.9e-15 | 80 | 127 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpa.eqpkkfanvhklFGasnvlkllk 47 +CaaC +l r+C+++C la yfp+ +p++f +v lFG snv++ll+ Jcr4S05387.10 80 PCAACTILHRRCTDKCYLASYFPQgVEPHNFTVVDSLFGLSNVVELLQ 127 7***********************5559****************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.424 | 79 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-13 | 80 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MGNNPFLFPS TVSYSQPSLP SSPSFNSYIP SPSPSLSFDS YSPSSPSLNS PFQFYQSLPS 60 PPSQISSNHF GPRSADAVGP CAACTILHRR CTDKCYLASY FPQGVEPHNF TVVDSLFGLS 120 NVVELLQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020535449.1 | 4e-82 | transcriptional corepressor LEUNIG | ||||
TrEMBL | A0A067LCH1 | 8e-80 | A0A067LCH1_JATCU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 7e-14 | LOB domain-containing protein 11 |
Publications ? help Back to Top | |||
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