PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05372.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 122aa MW: 13322 Da PI: 4.6844 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 44.1 | 5.8e-14 | 48 | 95 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllk 47 +CaaCk+l+++C+++C +a yfp++ p+kf +v lFG + ++ +l+ Jcr4S05372.20 48 PCAACKILGQRCTDKCYIASYFPSTTePHKFTVVGSLFGDDDIVDYLQ 95 7***********************7659**************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.621 | 47 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-12 | 48 | 95 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MSPSPSSNSP CPSSQSLNSP FQPSFPFPPS LTSSSHVAGP PSATVIGPCA ACKILGQRCT 60 DKCYIASYFP STTEPHKFTV VGSLFGDDDI VDYLQLEFKL DDYRVELEFD YFCTNRVRAL 120 TP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020535214.1 | 1e-61 | uncharacterized protein LOC105635408 isoform X2 | ||||
TrEMBL | A0A067LNX3 | 3e-60 | A0A067LNX3_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0008s04350.1 | 9e-15 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 9e-15 | LOB domain-containing protein 11 |