PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05357.20
Common NameGRAS08, JCGZ_09082, LOC105636307
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 723aa    MW: 82434.3 Da    PI: 6.8397
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05357.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS387.41.6e-1183507211374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL++cA+av+++d ++a++lL+++++++sp gd +qRla++f+ AL+arla+++s++yk + +++ts   ++++l+a++l+  ++P+ k+s++
  Jcr4S05357.20 350 LRTLLINCAQAVAADDRRNANELLKQVRQHSSPFGDGNQRLAHCFADALEARLAGTGSQIYKGFLSKKTS---TADVLKAYHLYLAACPFRKLSNF 442
                    6789************************************************************999998...89********************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    + N++I +  +++ r+HiiDf+i +G+QWp+L+q L+ R++gpp++RiTg++ p++g   +e++eetg+rLa +A++++vpfe+n+ +ak++e+++
  Jcr4S05357.20 443 VSNKTIKNLSANSMRLHIIDFGILYGFQWPTLIQRLSWRSGGPPNVRITGIDFPQPGfrPAERVEETGRRLATYAKKFNVPFEYNA-IAKKWETIK 537
                    ********************************************************9*****************************.7******** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    le+L+++++E+++V + ++  +llde+v ++s++d vL lvk+++P+++++   +  +n++ F++rf eal  +s+lfd+l++ +pre+++r+ +E
  Jcr4S05357.20 538 LEDLKIDREEVIIVTCFYRARNLLDETVVVHSPKDIVLGLVKKINPDIFIHGITNGAYNAPFFVTRFREALFQFSSLFDMLDTIVPREDKQRMLIE 633
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +e++gre+ nvvaceg er+er et+++W++r  +aGF +++++++++ qa   +rk + + + ++e+ ++l+lgWk+r L s+S+Wr
  Jcr4S05357.20 634 KEVFGREALNVVACEGWERVERPETYKQWQARSLNAGFVQLSFDKEIVRQATDKVRKLYHKDFLIDEDGQWLLLGWKGRILNSLSVWR 721
                    ***********************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.257324701IPR005202Transcription factor GRAS
PfamPF035145.5E-116350721IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MDPSFRGFAS SLNGIKLGNR TVSIIPDKRF ENSFVEHKFE ELPYLPPDPN PSNVAPHSNL  60
IYEEESPEDC DFSDTVLKYI NQILMEEDME DKTCMLQDSL DLQAAEKSFY EVLGKRYPPS  120
PEPNPNESFI SNCSNYLEDN ACIQNQRYNS PFKPPNFRVS SLSQSSYSST NSVTTTMDGP  180
VDSPSSTFRI PDWNNESQSI SQFMKGVEEA SKFLPNGDDL FRNIEVNGFL CKEPKLRSSE  240
VMIKERRKDE GECSSGLPRV RKNPYGEDGD IEEGRSSKQP AVYTESNMEP HVFDRMLLYS  300
AGEGWEDFKD LCEALKNATI KNDLNVQSKG SSGGKGRRKK TTGRKEVVDL RTLLINCAQA  360
VAADDRRNAN ELLKQVRQHS SPFGDGNQRL AHCFADALEA RLAGTGSQIY KGFLSKKTST  420
ADVLKAYHLY LAACPFRKLS NFVSNKTIKN LSANSMRLHI IDFGILYGFQ WPTLIQRLSW  480
RSGGPPNVRI TGIDFPQPGF RPAERVEETG RRLATYAKKF NVPFEYNAIA KKWETIKLED  540
LKIDREEVII VTCFYRARNL LDETVVVHSP KDIVLGLVKK INPDIFIHGI TNGAYNAPFF  600
VTRFREALFQ FSSLFDMLDT IVPREDKQRM LIEKEVFGRE ALNVVACEGW ERVERPETYK  660
QWQARSLNAG FVQLSFDKEI VRQATDKVRK LYHKDFLIDE DGQWLLLGWK GRILNSLSVW  720
RPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-5035672224379Protein SCARECROW
5b3h_D4e-5035672224379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052700.0KM405270.1 Jatropha curcas GRAS08 protein (GRAS08) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074952.10.0scarecrow-like protein 9
RefseqXP_012074953.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A067KUX60.0A0A067KUX6_JATCU; GRAS08 protein
STRINGcassava4.1_002308m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]