PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05344.10 | ||||||||
Common Name | JCGZ_06675, LOC105635386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 23623.1 Da PI: 6.2363 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.4 | 2.1e-42 | 59 | 158 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la+ Jcr4S05344.10 59 PCAACKILRRRCAEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPEFQRADAVSSMVYEANARIRDPVYGCAGAICHLQKQVNELQAQLAK 154 7*********************************************************************************************** PP DUF260 97 lkee 100 +++e Jcr4S05344.10 155 AQAE 158 9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.115 | 58 | 159 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-42 | 59 | 156 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
METLDKATSK PISPIAVPSP LFSYSSPSSS PSPSPSSPSQ SSPTNTLPPP PPLPVVLSPC 60 AACKILRRRC AEKCVLAPYF PPTEPYKFTI AHRVFGASNI IKFLQELPEF QRADAVSSMV 120 YEANARIRDP VYGCAGAICH LQKQVNELQA QLAKAQAELV NMQCQQANLV ALICMEMTQS 180 TNNHQEPILQ QQQYIDTSCF LDETNLGTSW EPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 51 | 166 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 51 | 166 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430663 | 1e-176 | KF430663.1 Jatropha curcas microsatellite pJcSSR2595 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012073862.1 | 1e-157 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 4e-75 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A067LNW3 | 1e-156 | A0A067LNW3_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0008s04350.1 | 1e-106 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-63 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 105635386 |
Publications ? help Back to Top | |||
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