PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S05343.10

Common Name

JCGZ_03516, LOC105632368

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 433aa MW: 47403.5 Da PI: 6.7323

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S05343.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	47.1	6.7e-15	76	125	1	49
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkal 49 +CaaCk+lrr C+++C +a yfp + p++fa++ lFG snv+++l++ Jcr4S05343.10 76 PCAACKILRRPCTDKCYVASYFPPSVePHNFAVIDSLFGHSNVVEYLQQN 125 7*******************775449****************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.686	75	180	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-13	76	124	IPR004883	Lateral organ boundaries, LOB
Gene3D	G3DSA:1.20.930.10	1.9E-22	309	411	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	2.62E-16	310	414	IPR017923	Transcription factor IIS, N-terminal
PROSITE profile	PS51319	17.988	322	408	IPR017923	Transcription factor IIS, N-terminal
SMART	SM00509	6.1E-16	328	407	IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
CDD	cd00183	4.64E-15	333	406	No hit	No description
Pfam	PF08711	5.7E-10	356	405	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MAKNPFVFPS TFSNSQSLTP SSSSSPPPSF NSCSSCPSSD PSLNSPFLSS HQSLPLPLSQ 60 NSFSPFGLPS AAVIGPCAAC KILRRPCTDK CYVASYFPPS VEPHNFAVID SLFGHSNVVE 120 YLQQNGNSLS YVPLLLLLKD TSKDGNQHQA NPSENSNDVR YGSKININGQ LMLGVSDNLK 180 AHSYSSSSKH LMMFGIDNLG TITSPANQLR GNNDLDMQAD MEDESLNSNV DPRVKDDVDA 240 KMDDGDSGDS GPESIWKSEI AKFTEKGGLV DSEGVEKLLQ LMKPEKNGKK IDLVGRSVLA 300 GVVAATDKFY CLDRFVHLRG LHVFDEWLQD VLKGKIGDGS GSKDSEKSIE EFLEVVLRAL 360 DKLPTNIYAL QTCTIGKLVN HLGTHKNLEI RKKARSLVDA WKKRVDAEID RDHGFKPPVV 420 WPTRTRLPRL PPN

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MAKNPFVFPS TFSNSQSLTP SSSSSPPPSF NSCSSCPSSD PSLNSPFLSS HQSLPLPLSQ  60
NSFSPFGLPS AAVIGPCAAC KILRRPCTDK CYVASYFPPS VEPHNFAVID SLFGHSNVVE  120
YLQQNGNSLS YVPLLLLLKD TSKDGNQHQA NPSENSNDVR YGSKININGQ LMLGVSDNLK  180
AHSYSSSSKH LMMFGIDNLG TITSPANQLR GNNDLDMQAD MEDESLNSNV DPRVKDDVDA  240
KMDDGDSGDS GPESIWKSEI AKFTEKGGLV DSEGVEKLLQ LMKPEKNGKK IDLVGRSVLA  300
GVVAATDKFY CLDRFVHLRG LHVFDEWLQD VLKGKIGDGS GSKDSEKSIE EFLEVVLRAL  360
DKLPTNIYAL QTCTIGKLVN HLGTHKNLEI RKKARSLVDA WKKRVDAEID RDHGFKPPVV  420
WPTRTRLPRL PPN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012070128.1	0.0	uncharacterized protein LOC105632368
TrEMBL	A0A067L657	0.0	A0A067L657_JATCU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	3e-15	LOB domain-containing protein 11

Link Out ? help Back to Top
Entrez Gene	105632368

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]