PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05336.40 | ||||||||
Common Name | JCGZ_01881, LOC105630019 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 359aa MW: 39710.9 Da PI: 8.2027 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.9e-18 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl Jcr4S05336.40 34 RGPWTPEEDELLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 81 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 7e-15 | 92 | 132 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Jcr4S05336.40 92 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 132 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 25 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.836 | 29 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.35E-29 | 31 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-14 | 33 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-16 | 34 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.49E-11 | 36 | 81 | No hit | No description |
PROSITE profile | PS51294 | 24.397 | 82 | 136 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 84 | 137 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 86 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.82E-11 | 92 | 132 | No hit | No description |
Pfam | PF00249 | 1.2E-13 | 92 | 132 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MRPPSTSASA GGGAAAAAAT STKTPCCSKI GLKRGPWTPE EDELLANYIK KEGEGRWRTL 60 PKRAGLLRCG KSCRLRWMNY LRPSVKRGQI APDEEDLILR LHRLLGNRWS LIAGRIPGRT 120 DNEIKNYWNT HLSKKLISQG IDPRTHKPLS LENQSVDQKQ QQQQQNKASL SKANRRSSSS 180 PMRNNNNNNQ APSSSGLEET TSGGSTQIIS NKENIYFENA SFDQYHNNAT THGYTSLLNC 240 GGGCDVDGNN CGMDLRNNIQ GVSNEEDEDI NYCTDDVFSS FLNSLINEEA FTTQQQQQQQ 300 QQQQQQQQQT INGIMIPSSD PLVSISGSTF GLGTGWESAL MSSNFNPNGP SKRVNEQLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-25 | 32 | 136 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034700 | 0.0 | KM034700.1 Jatropha curcas clone JcMYB080 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067087.1 | 0.0 | transcription repressor MYB5 | ||||
Swissprot | Q38850 | 6e-85 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A067L4C7 | 0.0 | A0A067L4C7_JATCU; MYB family protein | ||||
STRING | cassava4.1_011594m | 1e-168 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3894 | 30 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-80 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 105630019 |
Publications ? help Back to Top | |||
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