PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05336.40
Common NameJCGZ_01881, LOC105630019
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 359aa    MW: 39710.9 Da    PI: 8.2027
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05336.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-183481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl
    Jcr4S05336.40 34 RGPWTPEEDELLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 81
                     89******************************99************97 PP

2Myb_DNA-binding46.87e-1592132648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
    Jcr4S05336.40  92 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 132
                      89***************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-222583IPR009057Homeodomain-like
PROSITE profilePS5129416.8362981IPR017930Myb domain
SuperFamilySSF466895.35E-2931128IPR009057Homeodomain-like
SMARTSM007177.9E-143383IPR001005SANT/Myb domain
PfamPF002494.2E-163481IPR001005SANT/Myb domain
CDDcd001672.49E-113681No hitNo description
PROSITE profilePS5129424.39782136IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2484137IPR009057Homeodomain-like
SMARTSM007172.7E-1386134IPR001005SANT/Myb domain
CDDcd001673.82E-1192132No hitNo description
PfamPF002491.2E-1392132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MRPPSTSASA GGGAAAAAAT STKTPCCSKI GLKRGPWTPE EDELLANYIK KEGEGRWRTL  60
PKRAGLLRCG KSCRLRWMNY LRPSVKRGQI APDEEDLILR LHRLLGNRWS LIAGRIPGRT  120
DNEIKNYWNT HLSKKLISQG IDPRTHKPLS LENQSVDQKQ QQQQQNKASL SKANRRSSSS  180
PMRNNNNNNQ APSSSGLEET TSGGSTQIIS NKENIYFENA SFDQYHNNAT THGYTSLLNC  240
GGGCDVDGNN CGMDLRNNIQ GVSNEEDEDI NYCTDDVFSS FLNSLINEEA FTTQQQQQQQ  300
QQQQQQQQQT INGIMIPSSD PLVSISGSTF GLGTGWESAL MSSNFNPNGP SKRVNEQLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25321365108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347000.0KM034700.1 Jatropha curcas clone JcMYB080 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067087.10.0transcription repressor MYB5
SwissprotQ388506e-85MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A067L4C70.0A0A067L4C7_JATCU; MYB family protein
STRINGcassava4.1_011594m1e-168(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-80myb domain protein 5
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]