PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05310.40 | ||||||||
Common Name | JCGZ_12566, LOC105639998 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bZIP | ||||||||
Protein Properties | Length: 195aa MW: 22638.2 Da PI: 9.9713 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.8 | 1.8e-11 | 87 | 143 | 5 | 61 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++ rr+++NRe+ArrsR RK++ +e+L++ v L eN++L ++l ++++++ Jcr4S05310.40 87 RKRRRMISNRESARRSRMRKQKHLENLRNQVNRLRIENRELTNRLRFVLYHCQSVRR 143 5789**************************************999877777777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-9 | 80 | 132 | No hit | No description |
SMART | SM00338 | 1.0E-12 | 83 | 147 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.726 | 85 | 131 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.44E-11 | 87 | 135 | No hit | No description |
Pfam | PF00170 | 1.2E-8 | 87 | 142 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.13E-18 | 88 | 139 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 90 | 105 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSSTVPTPAF FLSDPMFGDQ FPSFENGGFT PWDCSELLAS EAQDHDDHNN TQLSPKPVGS 60 GSSSGSDEPS EPNRSDQTST VSVIDERKRR RMISNRESAR RSRMRKQKHL ENLRNQVNRL 120 RIENRELTNR LRFVLYHCQS VRRDNDRLRS EHSMLRQKLS NIRQILMFRQ LQQFTSAWPC 180 NNLITTEQNP SLITS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 90 | RKRRR |
2 | 86 | 107 | RKRRRMISNRESARRSRMRKQK |
3 | 99 | 106 | RRSRMRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079592.1 | 1e-142 | basic leucine zipper 4 | ||||
TrEMBL | A0A067KIL3 | 1e-141 | A0A067KIL3_JATCU; Uncharacterized protein | ||||
STRING | XP_002533570.1 | 3e-83 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5435 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 9e-41 | basic leucine-zipper 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 105639998 |
Publications ? help Back to Top | |||
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