PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05308.50 | ||||||||
Common Name | JCGZ_21506 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 336aa MW: 38038.8 Da PI: 9.0918 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.9 | 1.5e-28 | 7 | 101 | 6 | 100 |
DUF260 6 kvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k++rrkC+++C l p+f e+ ++f++++++FG sn+ k++k+l+ ++r++a++s+++eA ++ +dP++G +g ++kl+q+ + lk++l +++++ Jcr4S05308.50 7 KHQRRKCNDNCLLKPCFGLERIEEFQAAQRVFGISNLNKMIKSLQAQDRHKAIESVIWEASIWKKDPINGPLGQYRKLEQENQFLKNQLIQQQQK 101 9***************************************************************************************9988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.361 | 1 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-26 | 7 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MDAQPAKHQR RKCNDNCLLK PCFGLERIEE FQAAQRVFGI SNLNKMIKSL QAQDRHKAIE 60 SVIWEASIWK KDPINGPLGQ YRKLEQENQF LKNQLIQQQQ KQIMSYPGRL GLQGFNNGVI 120 QQNCDFPANY SYSYSYDENI GTDLPMNNFS AVSNLWSSYL QGQDNTTLGR NIPILQANNF 180 SSKQEALSPI NGPIGLRVPS LLQTSSQIAC NNQGRGFLYE HGQGNLDNPN FVQSKNILNQ 240 TGDLVLGKAA TKLHRIKGRD VRYAPYLHNS QFNIQKHDIM RRSENNLNVQ HVQQLPNPSQ 300 QLNGIEGELI SQAHSSKMED PPLEKPTDKG LLTPQQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A067JM05 | 0.0 | A0A067JM05_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14786 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 8e-23 | LOB domain-containing protein 2 |
Publications ? help Back to Top | |||
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