PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05308.50
Common NameJCGZ_21506
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 336aa    MW: 38038.8 Da    PI: 9.0918
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05308.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.91.5e-2871016100
         DUF260   6 kvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                    k++rrkC+++C l p+f  e+ ++f++++++FG sn+ k++k+l+ ++r++a++s+++eA ++ +dP++G +g ++kl+q+ + lk++l +++++
  Jcr4S05308.50   7 KHQRRKCNDNCLLKPCFGLERIEEFQAAQRVFGISNLNKMIKSLQAQDRHKAIESVIWEASIWKKDPINGPLGQYRKLEQENQFLKNQLIQQQQK 101
                    9***************************************************************************************9988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.3611102IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-26799IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDAQPAKHQR RKCNDNCLLK PCFGLERIEE FQAAQRVFGI SNLNKMIKSL QAQDRHKAIE  60
SVIWEASIWK KDPINGPLGQ YRKLEQENQF LKNQLIQQQQ KQIMSYPGRL GLQGFNNGVI  120
QQNCDFPANY SYSYSYDENI GTDLPMNNFS AVSNLWSSYL QGQDNTTLGR NIPILQANNF  180
SSKQEALSPI NGPIGLRVPS LLQTSSQIAC NNQGRGFLYE HGQGNLDNPN FVQSKNILNQ  240
TGDLVLGKAA TKLHRIKGRD VRYAPYLHNS QFNIQKHDIM RRSENNLNVQ HVQQLPNPSQ  300
QLNGIEGELI SQAHSSKMED PPLEKPTDKG LLTPQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067JM050.0A0A067JM05_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF147861315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.18e-23LOB domain-containing protein 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]