PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05260.20
Common NameJCGZ_02538, LOC105632452
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 364aa    MW: 41552.9 Da    PI: 4.576
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05260.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.23.4e-36131324128
            NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                    G  F+Pt++elv++yLk k+ g ++++ + i+e+diyk+ePwdLpk   ++++ +e yfF++ ++      r++r+tk+gyW+ tgk++e+++ ++
  Jcr4S05260.20  13 GDGFRPTEKELVNHYLKLKMLGCDHQV-SRIPEIDIYKHEPWDLPKhlGANSNGEESYFFHRCRS-----GRPRRTTKAGYWNVTGKKREIKN-DE 101
                    678*********************999.77***************733444566799****9865.....599********************.88 PP

            NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ +k ++vfykgr+pkg +++W+mhey++
  Jcr4S05260.20 102 GEIVIKSIFVFYKGRTPKGIRAEWTMHEYSA 132
                    89***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-399147IPR003441NAC domain
PROSITE profilePS5100538.19510147IPR003441NAC domain
PfamPF023651.0E-1713131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MATPTSESVQ DVGDGFRPTE KELVNHYLKL KMLGCDHQVS RIPEIDIYKH EPWDLPKHLG  60
ANSNGEESYF FHRCRSGRPR RTTKAGYWNV TGKKREIKND EGEIVIKSIF VFYKGRTPKG  120
IRAEWTMHEY SAAANKRDFV LCKLFRKEKI CKKPNDNPTT APTNNDEGTI PATENGELQS  180
TIPASDEREL CQDMAPCDPQ NQNSYQKTDY STFYDAKTCK LMTCENQATD AAIIEQEDFH  240
TPTNDDETAD TGELDSTITA SDKGELCQDR APYNPQNQNS CKKTDYPTFI DGETSKIMTS  300
ENQAIDAAIA EQFDLEPLPN MDLSLEFNEQ SWTFNSALDS YMQTKQDFSN YDIWNFSKGE  360
QYQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-24415314174NAC domain-containing protein 19
3swm_B5e-24415314174NAC domain-containing protein 19
3swm_C5e-24415314174NAC domain-containing protein 19
3swm_D5e-24415314174NAC domain-containing protein 19
3swp_A5e-24415314174NAC domain-containing protein 19
3swp_B5e-24415314174NAC domain-containing protein 19
3swp_C5e-24415314174NAC domain-containing protein 19
3swp_D5e-24415314174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753531e-168KC775353.1 Jatropha curcas NAC transcription factor 075 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070224.10.0NAC domain-containing protein 41
TrEMBLR4NEX40.0R4NEX4_JATCU; NAC transcription factor 075
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2258533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.22e-34NAC 014
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]