PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05231.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 588aa    MW: 66882.9 Da    PI: 8.0143
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05231.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-08399441140
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      +++W+ eE ell ++ +++++g   +W+ I++++g+gR+ +++
    Jcr4S05231.10 399 KKPWSREEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 441
                      689***********************************99876 PP
2Myb_DNA-binding28.24.3e-09531575345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
    Jcr4S05231.10 531 VWSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVNQCKKKFA 575
                      7********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007611.68578159IPR001623DnaJ domain
SuperFamilySSF465655.1E-1095183IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.7E-11105178IPR001623DnaJ domain
PfamPF002262.8E-7105156IPR001623DnaJ domain
PROSITE patternPS006360136155IPR018253DnaJ domain, conserved site
SuperFamilySSF466893.37E-8395442IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-6396441IPR009057Homeodomain-like
PROSITE profilePS512937.297397452IPR017884SANT domain
SMARTSM007178.5E-7398451IPR001005SANT/Myb domain
PfamPF002494.0E-7399441IPR001005SANT/Myb domain
CDDcd001672.17E-5401441No hitNo description
PROSITE profilePS5129310.232527582IPR017884SANT domain
SMARTSM007174.2E-9528580IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-5529574IPR009057Homeodomain-like
SuperFamilySSF466891.87E-9530586IPR009057Homeodomain-like
PfamPF002491.8E-7531574IPR001005SANT/Myb domain
CDDcd001671.49E-6532578No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MAVHSRFRLI CHSQELEDGQ PVYVSSNSLP IKALKLEPAG HAFHAAALKL LGCEEEDAES  60
ADQKVPNEKE QSYMPSSDSY SSKGKKKSGT GDKQQDHYAL LGCIVNNHPD KQAALLLAEE  120
TEAAKQAKKD EIESHFKAIQ EAYEVLIDPL KRRIYDSTDE FDDDIPTDCA PQDFFKVFGP  180
AFMRNGRWSV NQPIPSLGDD NTTLKEVESF YDFWYSFKSW REFPHADEFD LEQAESREHK  240
RKRKKLKSRE RKKLRFWQRS LQEEEAARAA EEEKRRKEEE EKRAAEVTLQ LKKAKEKEKK  300
LLRKERTRLR ALSAPIVSQH LLDLSENDVE NLCLSSDIEQ LRNICDKMDG KEALEQAKVL  360
KDAKGCNNSS ESNHRGEKNS HQNGSSNGNV PLSSFEKKKK PWSREEIELL RKGMQKYPKG  420
TSRRWEVISE YIGTGRSVEE ILKAKETVLL QKPDSAKAFD SFLEKRKPAQ SIASPLTTRE  480
EIEGVSTKQG RENSDARMPN SEETSSGSAN NKNSDEAVAE NGVSSSSEQD VWSAVQERAL  540
VQALKTFPKE TSQRWERVAA AVPGKTVNQC KKKFALLKEN FRNKKNAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1317325320102Zuotin
5dje_B1e-1317325320102Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240244RKRKK
2240252RKRKKLKSRERKK
3240253RKRKKLKSRERKKL
4241252KRKKLKSRERKK
5242248RKKLKSR
6248254RERKKLR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2227301e-137CU222730.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075001.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A067LN920.0A0A067LN92_JATCU; Uncharacterized protein
STRINGcassava4.1_003314m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-103DnaJ domain ;Myb-like DNA-binding domain