PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05188.50
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 428aa    MW: 47250.6 Da    PI: 6.0287
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05188.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-091445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg W++eEde+l++++  +G g+W+++++  g
    Jcr4S05188.50 14 RGLWSPEEDEKLINYISTYGHGCWSSVPKLAG 45
                     788*************************9988 PP
2Myb_DNA-binding48.71.8e-15107149145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E  l+v+++  lG++ W+ Ia++++ gRt++++k++w+
    Jcr4S05188.50 107 RGSFSPQEAALIVELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 149
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-24644IPR009057Homeodomain-like
PROSITE profilePS512949.284956IPR017930Myb domain
SuperFamilySSF466893.59E-8945IPR009057Homeodomain-like
SMARTSM007171.9E-913103IPR001005SANT/Myb domain
PfamPF002496.3E-81445IPR001005SANT/Myb domain
CDDcd001677.06E-717101No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2484104IPR009057Homeodomain-like
SuperFamilySSF466898.36E-2087156IPR009057Homeodomain-like
PROSITE profilePS5129424.562102156IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-24105157IPR009057Homeodomain-like
SMARTSM007172.6E-15106154IPR001005SANT/Myb domain
PfamPF002495.6E-14107150IPR001005SANT/Myb domain
CDDcd001677.02E-11109149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS TYGHGCWSSV PKLAGSNSMV YLIDFPFFNS  60
PSSPSPSPPP PPPSPSFGFF FDIAGLQRCG KSCRLRWINY LRPDLKRGSF SPQEAALIVE  120
LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKRLISHD VPALAAFTDV HNPNGAEEAF  180
FSLSANPNLI LSAQQDQLYL PSPTSMLQSF GQLGDYKFNQ PNNNSSYNNF DLSQLAPSII  240
SPPPQNNNSD SSSSFDPMWA FPYLHQHLDP NHQEDQILNN GAGPHYVDHH QDEDQKLAND  300
HQSISALMGC HENQACMMPM MPKLCEIIEG MSSNICCNII PSSASSSGSQ EVVVTDPLVA  360
RLPCFQLGSY PHDPHVPSNQ MEYIDAIMSS LPSSSPSAFS SGQFGANPNN NNNNNNNNNL  420
PSSCCWDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26141567108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346550.0KM034655.1 Jatropha curcas clone JcMYB035 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068953.10.0transcription factor MYB26
SwissprotQ9SPG39e-75MYB26_ARATH; Transcription factor MYB26
TrEMBLA0A067KXA70.0A0A067KXA7_JATCU; MYB family protein
STRINGcassava4.1_009996m1e-171(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.12e-74myb domain protein 26
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  3. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]