PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05150.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 407aa    MW: 45083.3 Da    PI: 6.6317
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05150.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.4e-1669118255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  Jcr4S05150.10  69 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 118
                    889*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1865138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-2266139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.21567117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.35E-1569122No hitNo description
PfamPF000103.0E-1369118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-1273123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MRGKGNQNQD EDEYEEEEFG SRKDGPSSTL ANNNNNNNTN SNKEVLPFRC LIVGMXPDGK  60
NSDKANAMRS KHSVTEQRRR SKINERFQIL RDLIPHSDQK RDTASFLLEV IEYVQYLQEK  120
VQKYEGSYQG WTSEPTKLMP WGKFDAVGNP FNMDIAVQPM IPMTPTDIYL QICQIELTTI  180
ACDGLCFCFT VFRPSRNSHW RVQSFMGHPQ TVKNGSGPGL TFPGKFDENN IAISPSMLTS  240
TQNLVEPDTS RDIASKGMER QPELANKVMP LPMSLQTTMP TPVQSDGVVA NPLQQSVSGV  300
HLADFPVSGD APNQQEKVPI EGGTISISSV YSQGLFNSLT QALHSAGVDL SQANISVQID  360
LGKRANRGLT SGTSTAKDPR SSNQAAMRLR DMSSGEHFDQ AQKRLKT
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080473.10.0transcription factor BIM2 isoform X1
RefseqXP_020537516.10.0transcription factor BIM2 isoform X1
SwissprotQ9CAA43e-50BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A067K8R60.0A0A067K8R6_JATCU; Uncharacterized protein
STRINGXP_002514584.11e-145(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-76BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]