PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05126.20
Common NameJCGZ_14233, LOC105642822
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 278aa    MW: 31508.8 Da    PI: 9.0389
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05126.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl
    Jcr4S05126.20 14 RGPWTPREDTLLIKYIQAHGEGNWRSLPKKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding52.31.3e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ed+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l
    Jcr4S05126.20  67 RGNITPDEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.881961IPR017930Myb domain
SuperFamilySSF466899.9E-3111108IPR009057Homeodomain-like
SMARTSM007176.9E-141363IPR001005SANT/Myb domain
PfamPF002495.6E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-241568IPR009057Homeodomain-like
CDDcd001672.67E-111661No hitNo description
PROSITE profilePS5129426.76762116IPR017930Myb domain
SMARTSM007173.3E-1666114IPR001005SANT/Myb domain
PfamPF002495.3E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2669116IPR009057Homeodomain-like
CDDcd001673.64E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTPR EDTLLIKYIQ AHGEGNWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR MHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLRSQG  120
TDPHTHKKLP EPILQEGTKK KKKNNNNNKK NTKSKEKMEP EKPKIHLPIP VRFTCLSLPR  180
NDSFECNSLC SSAGGEGGSS AEAVVGNNWF NFKENDDHGI SFLVGDVGHE FVNGTDHDDL  240
APTESGNLEK LYEEYLLLLK TDDRDQVKLD SFAESLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138149KKKKKNNNNNKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347030.0KM034703.1 Jatropha curcas clone JcMYB083 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083169.10.0myb-related protein 308 isoform X1
SwissprotP813933e-68MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A067JX530.0A0A067JX53_JATCU; MYB family protein
STRINGEOX956611e-137(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-68myb domain protein 5
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]