PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05030.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 1349aa    MW: 152905 Da    PI: 8.7181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05030.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-1411041151148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48  
                       +g+WT+ Ed+ll  ++++ G g+W++++++ g++R++k+c++rw++yl
    Jcr4S05030.40 1104 KGAWTPAEDDLLRSCIQRRGEGQWHKVPSRAGLNRCRKSCRLRWLNYL 1151
                       79********************************************97 PP
2Myb_DNA-binding44.53.7e-1411571202148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48  
                       rg +T +E +l ++++++lG++ W++Ia +++ gRt++++k++w++++
    Jcr4S05030.40 1157 RGEFTSDEIDLMIRLHNLLGNR-WTLIAGRLP-GRTANDVKNFWNTHM 1202
                       899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139762.7E-6350386IPR025724GAG-pre-integrase domain
SuperFamilySSF566721.51E-32607801No hitNo description
PfamPF077273.7E-63608758IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566721.51E-328311009No hitNo description
CDDcd092721.03E-729061044No hitNo description
PROSITE profilePS5129422.84710991155IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2110991154IPR009057Homeodomain-like
SuperFamilySSF466891.76E-2511011198IPR009057Homeodomain-like
SMARTSM007173.7E-1211031153IPR001005SANT/Myb domain
PfamPF002494.0E-1411041151IPR001005SANT/Myb domain
CDDcd001679.50E-811061151No hitNo description
Gene3DG3DSA:1.10.10.604.9E-2211551206IPR009057Homeodomain-like
SMARTSM007179.2E-1411561204IPR001005SANT/Myb domain
PROSITE profilePS5129417.48611561206IPR017930Myb domain
PfamPF002492.0E-1211571201IPR001005SANT/Myb domain
CDDcd001671.23E-811591202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1349 aa     Download sequence    Send to blast
MSDDSVHTSG LNDEDLTRIA NLINTQNQKQ TISDNLTINV KLNSQNYAIW SRMMKVAIGG  60
KSKKLLNHIT EAATPPSAGD PHFEKWEQED LIVFSWLIQN MEPQLANNLT EYSTAKDLWN  120
ALVITYSSGK DKLQIFDLHT RANSMKQGSS TLEEFWLTMQ GIWGEIDRRE PNPMTCSTDI  180
ATYNKVKQEQ KLFQFLNGID HLYDQIKREI LRSEHLPSAE AAYASVRKEA ARLNIMGPAN  240
RESLSQGIGD GFVIIGKKEA SEATGVGLVA RGQRRSEPRN DGSSSRPDKS RLKCSHGGMS  300
KHTKDQCFEL IGYPEWWNEN HRNKGTKTSK AAAADIRSGK IIGRGTEHHG LYYVDEVAQH  360
GNVMLAHGTT EREAWLWHRR LGHPSIVDRT KFDPCAVKCV FVGYGVNQKG YRCYDPKTCR  420
VFTTMNCDFL ETEYYYNTHP SGQGERELKD TLSWFPSQDN VPSEPVNSTT GPSEAFIQST  480
ELNTTEESLP SFLIPEVRDS DAPETPVIEL PNCDNLETSV EQEENVGQYV LPPRSNRGVP  540
PKRYSPEKEA RGTKYPVTNV VRGSLSKRAR AFTIALYSEE VPHTIELALK SKNWNQAMKT  600
EMDALIKNDT WEKCQLPDGK KSVGCRWVFT IKHKLDGTVE RYKARLVAKG YTQTYGIDYS  660
ETFSPVAKID TIRVLFSIAA NKGWPLHQFD VKNAFLHGDL KEEVYMEAPP GFTNGFKTGE  720
VCRLKKSLYG LKQSPRAWFG RFTIVMKKYD FKQRNDDEEM SKLRRNLFTE FEMKDLGALK  780
YFLGIEVLRS TSGIFICQKK YTLDFLAEIG MVDCKPADTP IATNHGLQIV EGAESVDKEK  840
YQRLVGKLIY LSHTRPDIAY AVGVVSQFMH RPQTDHMNAV LRIIKYLKGT PSQGILFKRN  900
GHLDIQGYTD ADWAGSHVDR RSTSGYFTFV GGNLVTWRSK KQKVVALSSA EAEFRGIARG  960
LTEILWLRKL LSEIGFPPSG ASKIMCDNRA AISISENPVQ HDRTKHVEID RHFIKEKLEA  1020
GIVELPFVRS EDQLADILTK AVNGNSFHNV LNKLSIGDPT TQLEGECRMK RKSRDQNHSS  1080
SFPCQLTXHV LYRIPMVSPP PVRKGAWTPA EDDLLRSCIQ RRGEGQWHKV PSRAGLNRCR  1140
KSCRLRWLNY LKPDIKRGEF TSDEIDLMIR LHNLLGNRWT LIAGRLPGRT ANDVKNFWNT  1200
HMRKKLKPSS PHCEEDNEKG KTVKIIKPRP HKLSKNISLF TATAKDKDHR QNDNGSNNLG  1260
NGKASVPVAL PALDNKHNKE INNKSNSINP FAGESALTFL EGDSSSKEND WWCYFSFDEE  1320
IWNLSFNKEQ ELIFDGIEMD MGVMGCQDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-191079120633159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-191079120633159MYB PROTO-ONCOGENE PROTEIN
1h8a_C9e-201092120615128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346970.0KM034697.1 Jatropha curcas clone JcMYB077 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084388.20.0uncharacterized protein LOC107027847
RefseqXP_027775084.10.0uncharacterized protein LOC107027628
TrEMBLA0A251TA880.0A0A251TA88_HELAN; Putative ribonuclease H-like domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-54myb domain protein 113