PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S05011.40

Common Name

JCGZ_04882, LOC105634233

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 409aa MW: 45828.2 Da PI: 6.8786

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S05011.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.9	9.4e-33	265	320	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Jcr4S05011.40 265 KQRRCWSPELHRRFVNALQQLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 320 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.115	262	322	IPR017930	Myb domain
SuperFamily	SSF46689	2.84E-18	262	323	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.0E-30	263	324	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-27	265	320	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-8	267	318	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MGSIPPELSL DFRPTYVPKT ISDFLKEVSM IGDVSEKVSK LDGFVKGLEE EMRKIDAFKR 60 ELPLCMLLLN DAILFLKTES MQCTPSNNRP VLEEFIPLKK SDEEEEEEEE ESPIKKEKDY 120 KDKKNWMSSV QLWNSNEHSS TDYIFDPKQN LKLEYKSTKK GNQYANEDTF QACKSRNAAR 180 AFMPFKTYTG LSRKEDSNKN HNQNSEELPI PGLSLLTPGI KNLREESVST GSRTSCSRAV 240 SSSAPNPQLN LRNGLQPSQQ QTARKQRRCW SPELHRRFVN ALQQLGGSQA ATPKQIRELM 300 QVDGLTNDEV KSHLQKYRLH TRRMPTATAA PANQSLVVLG GLWVSQDQYG DSSKATSSQS 360 GSPQGPLQLA GNTGGTSTTG GDSMEDDEDA KSEGYSWKSH IHRSGKDDV

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MGSIPPELSL DFRPTYVPKT ISDFLKEVSM IGDVSEKVSK LDGFVKGLEE EMRKIDAFKR  60
ELPLCMLLLN DAILFLKTES MQCTPSNNRP VLEEFIPLKK SDEEEEEEEE ESPIKKEKDY  120
KDKKNWMSSV QLWNSNEHSS TDYIFDPKQN LKLEYKSTKK GNQYANEDTF QACKSRNAAR  180
AFMPFKTYTG LSRKEDSNKN HNQNSEELPI PGLSLLTPGI KNLREESVST GSRTSCSRAV  240
SSSAPNPQLN LRNGLQPSQQ QTARKQRRCW SPELHRRFVN ALQQLGGSQA ATPKQIRELM  300
QVDGLTNDEV KSHLQKYRLH TRRMPTATAA PANQSLVVLG GLWVSQDQYG DSSKATSSQS  360
GSPQGPLQLA GNTGGTSTTG GDSMEDDEDA KSEGYSWKSH IHRSGKDDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-13	265	318	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	265	318	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	265	318	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	265	318	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072452.1	0.0	myb family transcription factor EFM
TrEMBL	A0A067L2E9	0.0	A0A067L2E9_JATCU; Uncharacterized protein
STRING	cassava4.1_009052m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1208	34	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	3e-57	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	105634233

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]