PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04936.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 508aa    MW: 55422.6 Da    PI: 8.9205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04936.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.7e-052913113555
                    TS-STCHHHHHHHHHHHHHHH CS
            HLH  35 skKlsKaeiLekAveYIksLq 55 
                    s++ +Ka++L +A+eY+ksLq
  Jcr4S04936.40 291 SERSDKASMLDEAIEYLKSLQ 311
                    67889***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.569228310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-6290319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-7291339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.66E-4291315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MELLWQNGQV VVQSQTQMSL KKLPHSKYDD AVLPVEASNT REIRSTQEHH QQQQHLFMQE  60
DEMASWLHYP LNDTNFDQDF CADLLYPSAA CVTSTTTNTS AAPARSIQNP ESRPPPPPIS  120
AATATATAPR PPIPPTRRTE AVHNFAYFSK HRARGGVLEP GPSNLRHAVR ESTVVDSSDT  180
PAMPSESRVS EAAVARNTAG VSSGDNGCGT MSGAAAAVRV PNHHHKSRRR RTGSGREGRR  240
KRSITASKSD VGKREHHPRV DVEFESADAK KQVRGSTSTK RSRAAEVHNL SERSDKASML  300
DEAIEYLKSL QLQVQMMSMG CSMVPMMFSG IQQYMPPLGM GMGMGMGMDL GMNRPMMPFP  360
NVLAGAPLPT PTAAAHLGPR FPMPAFHMPP VPTPGPDPSR IQAANQSDPM LSAISAQTSH  420
QPGVPSFADP YQQYLGLQQM QMPVSQNQVM TRPSTSKPGT NQGPENVDNH QSEQWHIVVS  480
QFHPKIARIL PVLKNIYVDD GASALLSC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218230RVPNHHHKSRRRR
2227241RRRRTGSGREGRRKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085172.10.0transcription factor PIF1 isoform X2
TrEMBLA0A067JUE30.0A0A067JUE3_JATCU; Uncharacterized protein
STRINGXP_002521150.11e-161(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-21phytochrome interacting factor 3-like 5