PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04925.40
Common NameJCGZ_16088
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 314aa    MW: 33904.1 Da    PI: 8.6132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04925.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-131359147
                     TSSS-HHHHHHHHHHH.HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdav.kqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++  k +G+++W++I++ ++ gR++k+c++rw + 
    Jcr4S04925.40 13 KGPWSPEEDEALQRLGpKTMGPRNWSLISKSIP-GRSGKSCRLRWCNQ 59
                     79********9988652666666**********.***********985 PP
2Myb_DNA-binding53.26.7e-1768110347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T++Ed+ +++a++++G++ W+tIar ++ gRt++ +k++w++ 
    Jcr4S04925.40  68 PFTADEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 110
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.921860IPR017930Myb domain
SuperFamilySSF466893.74E-2810107IPR009057Homeodomain-like
SMARTSM007171.6E-101262IPR001005SANT/Myb domain
PfamPF002496.3E-131359IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-211467IPR009057Homeodomain-like
CDDcd001672.76E-121558No hitNo description
PROSITE profilePS5129423.6161115IPR017930Myb domain
SMARTSM007172.7E-1465113IPR001005SANT/Myb domain
CDDcd001671.50E-1168111No hitNo description
PfamPF002491.7E-1468110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2268114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MASAARKDVD RIKGPWSPEE DEALQRLGPK TMGPRNWSLI SKSIPGRSGK SCRLRWCNQL  60
SPEVEHRPFT ADEDDTIIRA HARFGNKWAT IARLLNGRTD NAIKNHWNST LKRKCSSLSD  120
DLNDDVQQPL KRSASVGAGT NISGLHLNPS SPSGSEVSDS SLPGMASSPV YRPLARTGSL  180
VPPGPSIDAT SSTTDPPTSL SLSLPGSDSC EASNQVSGSG SGSGFNHGLS PTHVVQTPAM  240
PPATLPVQQV PAVQQNCVGF EKQFFNPEFL AVMQEMIRKE VRNYMSGIEQ NGMCFQTEAI  300
RNAVVKRIGI SRIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-37121153105MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-37121153105C-Myb DNA-Binding Domain
1msf_C5e-37121153105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346220.0KM034622.1 Jatropha curcas clone JcMYB002 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295712.10.0transcription factor MYB44-like
SwissprotO231607e-91MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A067KZQ60.0A0A067KZQ6_JATCU; MYB family protein
STRINGcassava4.1_034350m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-71myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]