PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04864.40
Common NameJCGZ_19560, LOC105643768
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family DBB
Protein Properties Length: 297aa    MW: 32232.9 Da    PI: 6.0348
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04864.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.6e-06447542
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  Jcr4S04864.40  4 QCNVCEAAEANVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47
                   7******99*********************66899999999986 PP
2zf-B_box24.74.7e-085494337
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                   ++kC+ ++e    +fC +++ llC++C ++ H        H
  Jcr4S04864.40 54 MPKCDICQETAGFFFCLEDRALLCRKCDVSVHTAnayvsaH 94
                   789******98999******************545556666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.708147IPR000315B-box-type zinc finger
CDDcd000211.24E-8347No hitNo description
SMARTSM003361.7E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8025299IPR000315B-box-type zinc finger
SMARTSM003366.6E-145299IPR000315B-box-type zinc finger
PfamPF006433.5E-65494IPR000315B-box-type zinc finger
CDDcd000211.21E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKIQCNVCEA AEANVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSSS SPHMPKCDIC  60
QETAGFFFCL EDRALLCRKC DVSVHTANAY VSAHQRFLLT GVKVGLEPAN PGASSSSGKS  120
TLNEKTSETK SNSVSRRETP IPLTSPSNEV LPAQLGGGEF GPSKVSFSGG SAAVSIPQWQ  180
IDEFLGLTDF NQNYEYMDNG SSKADSGKRS DSDGSAILRS AEDEVDDEER LGQVPDSSWA  240
VPQIPSPPTA SGLHWPKNVQ NQYDSTDFVP DIGCSIMRKN HHYQQHGTLV TKQRRRL
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084355.10.0B-box zinc finger protein 22 isoform X3
RefseqXP_012084356.10.0B-box zinc finger protein 22 isoform X4
SwissprotQ9SYM28e-99BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A067JXZ20.0A0A067JXZ2_JATCU; Uncharacterized protein
STRINGcassava4.1_013053m1e-166(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-101light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]