PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04807.10
Common NameJCGZ_20055, LOC105650911
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 315aa    MW: 34898 Da    PI: 9.4245
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04807.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.2e-18219252134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Jcr4S04807.10 219 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 252
                    99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.609213249IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-16213263IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.8E-15217250IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.7E-15217276No hitNo description
CDDcd002028.89E-14218265No hitNo description
PfamPF003202.1E-15219252IPR000679Zinc finger, GATA-type
PROSITE patternPS003440219244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MIGPANFMDE IDCGSFFDHI DDLLDFPTDX XXXXXPPSTT MELRYEDIVQ LEWLSNFVED  60
SFSGGSLTIN NSSKNKEGST SINKDSSRQF QTSSPVSVLE SSSSCSGEKT APRSPEIIAS  120
GRRGRARSKR PRPASFTPRP AMQLISPSSS VSETHHPFAV PKVSSDSENY AESRLLIKLP  180
KQVAPEQKKK KKIKFTVPIV PSETSQNSPP QQQQAVRKCM HCEITKTPQW RAGPMGPKTL  240
CNACGVRYKS GRLFPEYRPA ASPTFVPSLH SNSHKKVLEM RTKTTTKTNV PGNATMMTNS  300
PELIPNDNNL AMDYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128132KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012093266.10.0GATA transcription factor 8
TrEMBLA0A067LIE50.0A0A067LIE5_JATCU; GATA transcription factor
STRINGXP_002534043.11e-158(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-44GATA family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]