PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04772.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 897aa    MW: 102862 Da    PI: 9.0899
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04772.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.71e-201053245
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    ++++  rqvtfskRr+g++KKA+EL +LC+a++a+i+fs+ gk
  Jcr4S04772.20 10 MVKDDNSRQVTFSKRRTGLFKKANELAILCAAQIAIIVFSPGGK 53
                   5789999**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.623157IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-23157IPR002100Transcription factor, MADS-box
CDDcd001202.68E-27257No hitNo description
PRINTSPR004042.4E-18323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-183859IPR002100Transcription factor, MADS-box
SuperFamilySSF530981.21E-22408505IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.103.2E-15411504IPR012337Ribonuclease H-like domain
PfamPF006657.8E-9412472IPR001584Integrase, catalytic core
PROSITE profilePS509949.532424537IPR001584Integrase, catalytic core
SuperFamilySSF566729.78E-10665848No hitNo description
PfamPF077271.3E-33666761IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MGRKKIEMKM VKDDNSRQVT FSKRRTGLFK KANELAILCA AQIAIIVFSP GGKPFSFELR  60
YTQCLREWEL AVTAQFRRKR DRRSALHPSR VAVRPRACAH APLEDFGRSS LADACGCFRR  120
APSTFLVPTS STCCRVFSPT VLQHHMGDGK KVDISFHSES PSLQISPVNQ LFPRGYLLLD  180
TAKKIWDASS QTYSQTENYA QRYELRQKVH KTKQGDLTIA QYFAELSGLW QELDYYQDFQ  240
ARCTDDATQV QKLLKSNIYK AWLIANSARE HIQAAKSSSS DRDQLFCDYC GKNRQTKKFC  300
WKLHGRPAKG RGGKRLDSSS TQIATSNFVN SGNAFLTFLA KIAKPSWLID SGANKHTTGS  360
IKHFLTYFKY QDTDKIRIAD GSLVPITGIV VACAMDCIHW MTFVIFQIRN FRKMICTQFD  420
VHVKILRTDN GTEYMNAVFH TYLDSNGIIH QTSCVNTNAQ NGVAERKNRH LPEVARSLMF  480
TMNLPKPYWG VAILSAAYLI NRYKCYHPSS RKYFVSMDVT FREFESYFPS QSPLQGEKYQ  540
MDEISFQGEI PIDINSKREQ PPKSLGRLDR LDLKTYTRRT NINTIMEHET SDQPSSPISI  600
PEDIEEQELS ESSLIPIDSD PNLDSSPSDN DLGIPIALRK GDWQEASRDS KWKVEMVEEM  660
RALVKNETWD LVTPPPGKKP VGSKWVFIVK HRADGSIERY TTRLVARGFS QTYEVDYQET  720
FAPVAKMNTI GIFLSCVVNL DWELHQFDVK NAFLHGDLKK ESDADHTLFI KHHEAREFEI  780
KDLGKFRYFL EIEVARYQRL VGRLIYLAHT RPDIAYAVSL VSQYMHDPRE SHLEAVHRIL  840
RYLKSALGDQ PQVIVFLLEE TWSHGEARSR LLLQGPVQKL NIELWHRGSV NFYGCAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119741e-111AP011974.1 Jatropha curcas DNA, clone: JHS03A10, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-17AGAMOUS-like 29