PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04660.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 256aa    MW: 27329.4 Da    PI: 7.9492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04660.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.1e-07203232637
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS- CS
            HLH   6 nerErrRRdriNsafeeLrellPk.askapskK 37 
                    +++Er RR ri +++ +L+el+P+ +   +++K
  Jcr4S04660.10 203 SIAERVRRTRISDRIRKLQELVPNmD---KCPK 232
                    689********************977...5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.42197256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-6200233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.37E-5201232No hitNo description
Gene3DG3DSA:4.10.280.109.5E-6202234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MQPTPSSTGA GGGGGGGGGG ELNRGGLGLA RFRSAPANWL EALLEEGEEG EDDPLKPNQT  60
LTQLLSSNTP TSRNSVPFGT SSVEPGNFFE PADFQRQNSS PADFLGNSGI GSDGYFSNFG  120
IPSNYDYMSP NMDVSSSSSK RARDVELHHS SSAKYPSSLK GEQSGQSPGG MSSLIEMEME  180
KIMEDSVPCR VRAKRGCATH PRSIAERVRR TRISDRIRKL QELVPNMDKC PKNGITINAK  240
GCVQLGAGTK LNWTKI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075470.11e-167transcription factor bHLH80
SwissprotQ9C8P81e-68BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A067KTD21e-166A0A067KTD2_JATCU; Uncharacterized protein
STRINGcassava4.1_013899m1e-102(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-57bHLH family protein