PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04651.20
Common NameJCGZ_01821, LOC105648179
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 541aa    MW: 59344.2 Da    PI: 5.6285
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04651.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-172471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l+++vk++G g+W+++ +  g+ R++k+c++rw ++l
    Jcr4S04651.20 24 KGPWTASEDAILIEYVKRHGEGNWNSVQKNSGLMRCGKSCRLRWANHL 71
                     79******************************************9986 PP
2Myb_DNA-binding50.45e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++
    Jcr4S04651.20  77 KGSFTPEEERIIIELHAKLGNK-WARMASQLP-GRTDNEIKNFWNT 120
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.321971IPR017930Myb domain
SuperFamilySSF466895.62E-3021118IPR009057Homeodomain-like
SMARTSM007174.4E-142373IPR001005SANT/Myb domain
PfamPF002493.1E-152471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-242578IPR009057Homeodomain-like
CDDcd001671.14E-112671No hitNo description
PROSITE patternPS0017503948IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.91272126IPR017930Myb domain
SMARTSM007172.3E-1676124IPR001005SANT/Myb domain
PfamPF002495.2E-1577120IPR001005SANT/Myb domain
CDDcd001671.23E-1179120No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2579125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MISNDGGALS VESSQKTNQG GLKKGPWTAS EDAILIEYVK RHGEGNWNSV QKNSGLMRCG  60
KSCRLRWANH LRPNLKKGSF TPEEERIIIE LHAKLGNKWA RMASQLPGRT DNEIKNFWNT  120
RMKRRQRAGL PIYPQEFLEE PSPFRIHQQQ SHHQNQQGQQ KHHNSSSSSP FSSLLSSSQK  180
STYNNSSLSL LDPINFSSSL DPLQNHLSSF YSNPAFQLKS FGDNSNPNSN NNNNTNSSLA  240
LPLSQYARSS PVTSIPSFNQ NFSSQAIPTP PPLPPSLHYN SNDFENNVSF TSLIMGAHVE  300
PIGLMPNSKS ELPLDQSSPR GNTGGGRGVG GEASSKNNDN DITSETDLVA EMQQDNRNSG  360
LLDALLMESE NLSRKEKSKV ENSLLLVASD KGKRVRNELT KEDKEEKEAI KRVKLSLADG  420
PGEASGENHY CDDFSSSPSS IGVKPSDQEA MEELNSMSDD LLTLLDDFPS PAPLPEWYRS  480
RNMSGGFSSG STGDGGGLEV DQQETSPAGH QVGDQVATAD DIPNVDWTFG SSYWNNMPGI  540
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31221255107B-MYB
1h8a_C1e-301512518127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346450.0KM034645.1 Jatropha curcas clone JcMYB025 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089881.10.0transcription factor MYB101
TrEMBLA0A067JT890.0A0A067JT89_JATCU; MYB family protein
STRINGcassava4.1_029822m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-74myb domain protein 101
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]