PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04602.10
Common NameJCGZ_14754
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 327aa    MW: 35570.3 Da    PI: 8.3662
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04602.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260461.5e-1476124148
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllka 48 
                    +CaaCk+lrr+C+++C la yfp++  p++f +v   FG s v+++l+ 
  Jcr4S04602.10  76 PCAACKILRRQCTDKCYLASYFPSTTePHNFTVVDSRFGLSDVHEFLQL 124
                    7***********************7659******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.88475181IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-1376124IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:2.130.10.104.2E-18235327IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.4E-6247286IPR001680WD40 repeat
SuperFamilySSF509781.17E-16250327IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.143254295IPR001680WD40 repeat
PROSITE profilePS5029416.796254327IPR017986WD40-repeat-containing domain
PfamPF004001.2E-4260286IPR001680WD40 repeat
PROSITE patternPS006780273287IPR019775WD40 repeat, conserved site
SMARTSM003204.4291325IPR001680WD40 repeat
PfamPF004000.014296327IPR001680WD40 repeat
PROSITE profilePS5008210.041298327IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAKYPFVFPS TFSNSQSSIP SSSSSSPSPS FNSYSSYPSS PSLNSPFHPS HQSLPLPPSQ  60
TSSSHFSWPS NDVVGPCAAC KILRRQCTDK CYLASYFPST TEPHNFTVVD SRFGLSDVHE  120
FLQLNRNSSS YVPLLLLLRD TSKDGNQLQA NPSNNGNIVP YRTNVNINGK PMLANSENSK  180
AHSYSSSSKP LNMFGTNDTG TLTSPANQLG DNNNLDLQAD MVGLNMLKGN VDRSDKVARK  240
HNTKGFTLVE VNSVRASAGK VVCCDLSSDG KLLASGGHDN KVVLWDTERE NLKSKTILEE  300
HSXLITDVRF SPSMPQLATS SFDKTVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020535325.10.0transcriptional corepressor LEUNIG
TrEMBLA0A067K8U30.0A0A067K8U3_JATCU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-14LOB domain-containing protein 11
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]