PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04597.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 191aa    MW: 21156.5 Da    PI: 9.6161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04597.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.1e-1077104330
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
            HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                    ++h+e+ErrRR+riN  +++Lr+l+P  
  Jcr4S04597.10  77 KSHSEAERRRRERINAHLATLRSLVPCT 104
                    58************************84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.79574145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-1077147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-777104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1278148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-680151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVSYCNYSAN SSSGIGYLNT LDPFSFSLQG FNGVLRDGSM VSQALVLDNE KGELVKAPVT  60
RVGKKVPSEA KVLAALKSHS EAERRRRERI NAHLATLRSL VPCTEKVALI YGDISFWYVT  120
ASISILLTMD KATLLAEVIS QVKELKKKAI DASKGLLIPM DDDEVKVETF DNGAKRWKFV  180
FQSIHMLRLS T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142841e-35AC214284.1 Populus trichocarpa clone POP076-F15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074626.12e-96transcription factor bHLH30
TrEMBLA0A067KLJ65e-95A0A067KLJ6_JATCU; Uncharacterized protein
STRINGcassava4.1_025964m8e-75(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-15bHLH family protein