PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04546.40

Common Name

JCGZ_08742, LOC105635797

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NF-YA

Protein Properties

Length: 295aa MW: 32285.4 Da PI: 10.5041

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04546.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	86.5	4e-27	140	196	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p++VN+KQy++I++RR +Rak+ e+k +++rkp++h SRh hA+rRpRg+gGrF Jcr4S04546.40 140 DGPIFVNPKQYHGIIRRRRTRAKAVLENKS-TRKRKPFMHLSRHLHAMRRPRGNGGRF 196 57*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.0E-29	138	199	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	32.178	139	199	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.9E-19	142	164	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.1E-24	142	196	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.9E-19	173	196	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAVKTLFFKE NDGIVHNPIG QLSSVPSIPW WSNLGPQSAY GESFGSFKLS SMEQSIGGDQ 60 VTAMKQARRG TEQGLDIDKG NTTQFTMFSG DCKTSNGGQK SPQTAMSLQK ALPEHCTHID 120 LGFSPSMGRI MLPMNMTTDD GPIFVNPKQY HGIIRRRRTR AKAVLENKST RKRKPFMHLS 180 RHLHAMRRPR GNGGRFLNTK NSNGTVEIEA KNAGGVQLSQ PAGSQSSEVL QSDSSKDHGG 240 SNLSGAEVTS MYSRRNFDHF SINHLAPPLH SFSVIMDTGH NVVMPNKWDI GAAAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-14	142	203	4	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	173	RRRTRAKAVLENKSTRKRK
2	155	174	RRRTRAKAVLENKSTRKRKP
3	156	174	RRTRAKAVLENKSTRKRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074293.1	0.0	nuclear transcription factor Y subunit A-10
TrEMBL	A0A067KM65	0.0	A0A067KM65_JATCU; Uncharacterized protein
STRING	cassava4.1_011620m	1e-138	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	3e-42	nuclear factor Y, subunit A2

Link Out ? help Back to Top
Entrez Gene	105635797

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]