PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04543.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 150aa    MW: 17064.2 Da    PI: 9.4706
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04543.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.43.7e-0814381943
                   HHHHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF 19 gilKKAeELSvLCdaevaviifsst 43
                   g lKK +ELS+LC++ ++ iifs  
  Jcr4S04543.10 14 GFLKKLKELSTLCGVVACAIIFSDY 38
                   89********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.89E-121381IPR002100Transcription factor, MADS-box
PfamPF003191.2E-61439IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MNLIGKXXXX XXXGFLKKLK ELSTLCGVVA CAIIFSDYNS SPDVWPSPSE ATLVLEKFKN  60
LPPNKKGKYM MDQETFLKKS IAKLKHKLEK ETKKNQRMEL ELTLKKCIAD GNVHHLDSLE  120
NANDLSDLLQ EKIERLSIGI ERAKSKTEDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020536000.12e-95agamous-like MADS-box protein AGL80
TrEMBLA0A067KTD66e-94A0A067KTD6_JATCU; Uncharacterized protein
STRINGEOY173122e-38(Theobroma cacao)
STRINGcassava4.1_031607m2e-38(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27810.15e-23M-type_MADS family protein