PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04513.40

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 611aa MW: 69840.8 Da PI: 6.6751

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04513.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	173.9	1.2e-53	261	443	3	186
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL +cA+av+s+d++ a+ lL ++++ +sp gd +qRla++f+++L+arla+ ++ y s+t ++ l+a++++ ++P+ ++shl a Jcr4S04513.40 261 TLLPQCAQAVASDDQRTAKDLLRQIRQYSSPFGDGNQRLAHFFANGLEARLAGIGTPGYTPAVNSTTG---AADMLKAYHIYISTCPFQTMSHLYA 353 6899***********************************************888888666666555...89******************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 Nq+I++ +e+ +r+HiiDf+i +G+QWp+L++ L++R++gpp+l iTg++ p++g ++++eetg+rL+k++e+++vpfe+++ +k+ Jcr4S04513.40 354 NQTIMKLAEKVTRLHIIDFGILYGFQWPCLIEHLSTRTGGPPKLCITGIEFPQPGfrPADRVEETGRRLRKYCERFHVPFEYHAYRHKNG 443 **************************************************9**************************9655555 PP
2	GRAS	145.7	4.5e-45	445	607	212	374
GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307 +l+d+++ ++s rd+vL+l+++++P+++++ + +n++ Fl+rf +al ++sa+fd l+a++pre+ er++ E+e++gr ++nv+aceg er+e Jcr4S04513.40 445 NLPDDTMVVKSVRDKVLNLMRQINPHIFIHGVVNGTYNAPFFLTRFRDALFHFSAMFDLLDATIPREEPERRMFEEEIFGRYAMNVIACEGGERVE 540 57899999999*********************************************************************************** PP GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r et+++W+ r ++aGF+p+pl+++++k++ + +r ++ + v+e+s+++++gWk+r ++++S+W+ Jcr4S04513.40 541 RPETYRQWQVRNGRAGFRPLPLDKEIMKKVISTVRSNYNSNFVVDEDSHWMLQGWKGRIIYALSVWK 607 **********************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.02	233	587	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.1E-51	261	443	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-42	445	607	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MDDPLIEATP VAVTGFRFGA HTISSESASS SEDSADNNDF SNAVLKYISD ILMEEELDSK 60 NCILQDCLAL QAAEKSLYDV LGQKYPPWSX XXXXXXXXXX XXXXXXXXXN LVESSWMFDQ 120 TEFEFSHTLN HPGHCLEKIL QVPDLYSESF QISTSSLILS ESEEKDCFFL NGLRERKHHD 180 REANGYSEGR SNKHSAYSFE KQEETEIFDE VLLNDSPSVC NSTQNGSDTK MKNGKHTKGS 240 NGRKGRSKKN SSKKEIVDLW TLLPQCAQAV ASDDQRTAKD LLRQIRQYSS PFGDGNQRLA 300 HFFANGLEAR LAGIGTPGYT PAVNSTTGAA DMLKAYHIYI STCPFQTMSH LYANQTIMKL 360 AEKVTRLHII DFGILYGFQW PCLIEHLSTR TGGPPKLCIT GIEFPQPGFR PADRVEETGR 420 RLRKYCERFH VPFEYHAYRH KNGKNLPDDT MVVKSVRDKV LNLMRQINPH IFIHGVVNGT 480 YNAPFFLTRF RDALFHFSAM FDLLDATIPR EEPERRMFEE EIFGRYAMNV IACEGGERVE 540 RPETYRQWQV RNGRAGFRPL PLDKEIMKKV ISTVRSNYNS NFVVDEDSHW MLQGWKGRII 600 YALSVWKPAY D

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MDDPLIEATP VAVTGFRFGA HTISSESASS SEDSADNNDF SNAVLKYISD ILMEEELDSK  60
NCILQDCLAL QAAEKSLYDV LGQKYPPWSX XXXXXXXXXX XXXXXXXXXN LVESSWMFDQ  120
TEFEFSHTLN HPGHCLEKIL QVPDLYSESF QISTSSLILS ESEEKDCFFL NGLRERKHHD  180
REANGYSEGR SNKHSAYSFE KQEETEIFDE VLLNDSPSVC NSTQNGSDTK MKNGKHTKGS  240
NGRKGRSKKN SSKKEIVDLW TLLPQCAQAV ASDDQRTAKD LLRQIRQYSS PFGDGNQRLA  300
HFFANGLEAR LAGIGTPGYT PAVNSTTGAA DMLKAYHIYI STCPFQTMSH LYANQTIMKL  360
AEKVTRLHII DFGILYGFQW PCLIEHLSTR TGGPPKLCIT GIEFPQPGFR PADRVEETGR  420
RLRKYCERFH VPFEYHAYRH KNGKNLPDDT MVVKSVRDKV LNLMRQINPH IFIHGVVNGT  480
YNAPFFLTRF RDALFHFSAM FDLLDATIPR EEPERRMFEE EIFGRYAMNV IACEGGERVE  540
RPETYRQWQV RNGRAGFRPL PLDKEIMKKV ISTVRSNYNS NFVVDEDSHW MLQGWKGRII  600
YALSVWKPAY D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-44	263	607	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405255	0.0	KM405255.1 Jatropha curcas GRAS06 protein (GRAS06) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012067004.1	0.0	scarecrow-like protein 14 isoform X1
Swissprot	P0C883	1e-169	SCL33_ARATH; Scarecrow-like protein 33
TrEMBL	B9T679	0.0	B9T679_RICCO; Chitin-inducible gibberellin-responsive protein, putative
STRING	XP_002533748.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-145	SCARECROW-like 14