PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04513.10
Common NameGRAS02, JCGZ_02978, LOC105629955
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 812aa    MW: 92555.7 Da    PI: 5.4147
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04513.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.99e-1114408096373
           GRAS   6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                    + cA+avs++d + a++lL++++e++sp gd  qRla+yf+++L+arla+s+ ++ +  ++ ++++++ ++ l+a+k+  +++P+  +s + aN++
  Jcr4S04513.10 440 IICAQAVSANDVRTANELLKQIREHSSPWGDGSQRLAHYFANGLEARLAGSGIGMQNFYTSIASRKTTAADLLNAYKTHLNACPYKMLSIIFANKM 535
                    56**************************************************9999999999999999**************************** PP

           GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                    Il+a+e+++++HiiDf++ +G+QWp L+q L+ R++gpp+lRiTg++ p++g   +++++ tg+rLak++e+++vpfe+++++a+++e + +e+L+
  Jcr4S04513.10 536 ILRAAEKATTLHIIDFGVLYGFQWPILIQHLSVREGGPPKLRITGIELPQHGfrLAQRIQDTGRRLAKYCERFNVPFEYRPIAAQNWERIPIEDLK 631
                    ***************************************************99999**************************************** PP

           GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                    ++++E+laVn+  + ++l+des + + +rd+vL+l+++++Pk++v+   +  +n++ F++rf eal ++s+ fd+++ ++pre++eri  Ere++g
  Jcr4S04513.10 632 INRNEVLAVNCLGRFKNLPDESFEDTCPRDAVLELIRKINPKIFVHFVVNGTYNTPFFVTRFREALFHFSSQFDMFDCTIPRENQERILFEREFFG 727
                    ************************************************************************************************ PP

           GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    re++nvvaceg+er+er e++++W++r  +aG+kp+pl++++ ++ +  ++k + + + ++e+s+++++gWk+r + + S+W
  Jcr4S04513.10 728 REAMNVVACEGNERVERPESYKQWHSRSLRAGLKPLPLDQEVIETCREKMKKWYHKDFVLDEDSNWMLQGWKGRIINASSCW 809
                    ******************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.467409790IPR005202Transcription factor GRAS
PfamPF035143.1E-108440809IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MMVYSAGKFE SFSLFRAKLW WACLLLEEFL DIDRYMSMDP KYRGFSYHTC NSILDEQLTF  60
QNPNQYLNTD SEFRFFSPFS DLSFISVPSN PPDSGQNDLG VYFASSSEVE SFESSPGWSP  120
EGDASSSSSS DRDYINPVLK YISQMLMEEN MEDKPHASYD SVALTATEKS LYDVLGEQYP  180
FSNSPQPHIN HESPDSDHLG STSYIADPRW IXTSTGAGVT ITGATTSYIA DPRWIADVGG  240
SNPVSSQTSI SNDYHFQSNS QFFVNPSTGL PEIGNGLMCN SSVNETLLQF NKGLEEPSRF  300
LPKDIQLGTD PESNTFITEQ KEEGQVVIVK EDKIETTCSS DRSRATKNHE REDSDLDQGR  360
NSKQSATYVE ESDLSEMFDK VLLWPPLEDK KQCYVLQDKQ EVASQNPKPD EQLKRLNGGK  420
TRAKKQSKKK ETVDLRTLNI ICAQAVSAND VRTANELLKQ IREHSSPWGD GSQRLAHYFA  480
NGLEARLAGS GIGMQNFYTS IASRKTTAAD LLNAYKTHLN ACPYKMLSII FANKMILRAA  540
EKATTLHIID FGVLYGFQWP ILIQHLSVRE GGPPKLRITG IELPQHGFRL AQRIQDTGRR  600
LAKYCERFNV PFEYRPIAAQ NWERIPIEDL KINRNEVLAV NCLGRFKNLP DESFEDTCPR  660
DAVLELIRKI NPKIFVHFVV NGTYNTPFFV TRFREALFHF SSQFDMFDCT IPRENQERIL  720
FEREFFGREA MNVVACEGNE RVERPESYKQ WHSRSLRAGL KPLPLDQEVI ETCREKMKKW  780
YHKDFVLDED SNWMLQGWKG RIINASSCWV PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-504188111379Protein SCARECROW
5b3h_D7e-504188111379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052580.0KM405258.1 Jatropha curcas GRAS02 protein (GRAS02) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067008.10.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A067L4X70.0A0A067L4X7_JATCU; GRAS02 protein
STRINGXP_002533752.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]