PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04475.40
Common NameJCGZ_11650, LOC105640768
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 432aa    MW: 47386.4 Da    PI: 5.3379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04475.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l+ +++++G g W+t +++ g+ R++k+c++rw +yl
    Jcr4S04475.40 14 KGAWTADEDHKLIAYIQEHGEGGWRTLPQKAGLQRCGKSCRLRWANYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.81e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++teE+++++++++ lG++ W++Iar+++ +Rt++ +k++w+++l
    Jcr4S04475.40  67 RGKFSTEEEQKIIQLHASLGNR-WSAIARHLP-KRTDNGIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-22664IPR009057Homeodomain-like
PROSITE profilePS5129414.905961IPR017930Myb domain
SuperFamilySSF466891.35E-2811108IPR009057Homeodomain-like
SMARTSM007174.1E-101363IPR001005SANT/Myb domain
PfamPF002492.0E-141461IPR001005SANT/Myb domain
CDDcd001672.38E-81661No hitNo description
PROSITE profilePS5129426.4862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2665116IPR009057Homeodomain-like
SMARTSM007177.7E-1666114IPR001005SANT/Myb domain
PfamPF002494.9E-1667112IPR001005SANT/Myb domain
CDDcd001673.79E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009625Biological Processresponse to insect
GO:0009682Biological Processinduced systemic resistance
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGRTPCYNEA GLKKGAWTAD EDHKLIAYIQ EHGEGGWRTL PQKAGLQRCG KSCRLRWANY  60
LRPDIRRGKF STEEEQKIIQ LHASLGNRWS AIARHLPKRT DNGIKNYWNT HLKKRLIDMG  120
VDPITHKQIG PTSNGNSTDD IRPIQRSVST SAKLLNKVSA KLAQIHWKDS SNGLDAIKKV  180
LLNSTKDNNI TLSGGCDGTN GDGNGGDDSD NEILASIPKV GRPISRSNSS RLINKVATKL  240
VPSKGLDLIK ERLGATTSNQ SLASISVSDA SIAGISSYNN IESPISISEY LEDIPTLSSK  300
CDSYESTRNL GNVREDEVNE AFAVLLQTMS PCELEDYLGN YGGEDGGTLL TNNNLSQNED  360
VQVDISSAQN SNFIEQVSDM PFGGGYVSAY NYDERFNSRD YYNGEGESSG GGLDVSLNYW  420
NDDFDLGNYA IQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347110.0KM034711.1 Jatropha curcas clone JcMYB091 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020537535.10.0transcription factor MYB28
TrEMBLA0A067KHI00.0A0A067KHI0_JATCU; MYB family protein
STRINGcassava4.1_027220m1e-161(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07690.15e-74myb domain protein 29
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]