PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04454.20
Common NameLOC105631237
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 191aa    MW: 21777.6 Da    PI: 8.4472
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04454.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-18139185148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++v+q+G + W++Ia+++  gR +kqc++rw+++l
    Jcr4S04454.20 139 KGQWTEEEDRKLIRLVEQFGVKKWALIAAELD-GRAGKQCRERWHNHL 185
                      799*****************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-18133190IPR009057Homeodomain-like
PROSITE profilePS5129430.204134189IPR017930Myb domain
SMARTSM007174.8E-17138187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-23138188IPR009057Homeodomain-like
PfamPF002492.6E-17139185IPR001005SANT/Myb domain
CDDcd001671.03E-15142185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEGVGGGGFS IGNLQKNPFI YRPTPPLTAV DRFLWDRNHF SQQKSEKEVK NKETVISTNV  60
FYDFSSSSGA ITGVLPWPSF QDISFVDGLF IEGDSHNLDW VYEGNPNVGF EEEEMILEKS  120
SKGYTGKKLK KRSSPSLIKG QWTEEEDRKL IRLVEQFGVK KWALIAAELD GRAGKQCRER  180
WHNHLRPNIK V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-21135190358B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346400.0KM034640.1 Jatropha curcas clone JcMYB020 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068681.11e-138transcription factor MYB63
TrEMBLA0A097HUI91e-137A0A097HUI9_JATCU; MYB family protein
STRINGXP_002525613.12e-72(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-33myb domain protein 119