PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04338.20
Common NameJCGZ_19512, WRKY25
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 289aa    MW: 32722.6 Da    PI: 8.4454
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04338.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46e-33153210259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk++e+s edp++v++tYeg+Hnh+
  Jcr4S04338.20 153 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCRVKKRIEKSVEDPSIVITTYEGQHNHQ 210
                    8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-34137212IPR003657WRKY domain
SuperFamilySSF1182901.96E-28145212IPR003657WRKY domain
PROSITE profilePS5081131.284147212IPR003657WRKY domain
SMARTSM007744.9E-38152211IPR003657WRKY domain
PfamPF031061.1E-25153210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTDRSREAAF PFLIDNSFTY TEPSTLITQN SLQAFDLMHM SFTDYLHGST DYPTAFDMSE  60
VICPIQGYST KIDAAAATKI ENPSTDSSIS CPSNDLAAQQ HSQKVKKEKQ PPTGHGNGND  120
KSNKEVSKPK KKEKQQREQR FAFLTKSEND HLEDGYRWRK YGQKAVKNSP YPRSYYRCTS  180
QKCRVKKRIE KSVEDPSIVI TTYEGQHNHQ CPATAGGTRS PLLLASTSSI VNTSFPLEFL  240
ARFLLPNNKD DNALFYQYIN APHQHLHLPD FGQLQDLVPS NTFIFGQQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-261452131078Probable WRKY transcription factor 4
2lex_A1e-261452131078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852770.0KC485277.1 Jatropha curcas WRKY transcription factor 25 (WRKY25) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082639.20.0probable WRKY transcription factor 71 isoform X1
SwissprotQ93WV42e-44WRK71_ARATH; WRKY transcription factor 71
TrEMBLS5CKA20.0S5CKA2_JATCU; WRKY transcription factor 25
STRINGVIT_12s0028g00270.t013e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-46WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  4. Yu Y, et al.
    WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana.
    Plant J., 2016. 85(1): p. 96-106
    [PMID:26643131]
  5. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  6. Yu Y, et al.
    WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(2): p. 414-422
    [PMID:29272465]