PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S04332.40 | ||||||||
Common Name | JCGZ_25003, LOC105646582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 207aa MW: 24637.9 Da PI: 9.1487 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 42.2 | 2.1e-13 | 1 | 46 | 38 | 86 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 m+e+g++rs++qCk+kw+nl +ryk ++++e + + +++p++++l+ Jcr4S04332.40 1 MKEKGYNRSAEQCKCKWKNLVTRYKGCETMEPES--LR-QQFPFYNELQ 46 89******************************94..44.489*****98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-10 | 1 | 48 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 207 aa Download sequence Send to blast |
MKEKGYNRSA EQCKCKWKNL VTRYKGCETM EPESLRQQFP FYNELQAIFT ARMQRMLWVE 60 SEVGGAGGSK KKAVQLSSDE EDDNEESEGE KGSIRKKKKG KSMANIGSGS SSSGNSKNLK 120 EILEDFMKQQ MQMEMQWREA FEARENERRM KEMEWRQTME ALENERIMMD RRWREREEQR 180 RIREEARAEK RDALITALLN KLRREEI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00481 | DAP | Transfer from AT5G01380 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087841.1 | 1e-147 | trihelix transcription factor GT-3b | ||||
Refseq | XP_020539973.1 | 1e-147 | trihelix transcription factor GT-3b | ||||
Refseq | XP_020539974.1 | 1e-147 | trihelix transcription factor GT-3b | ||||
Swissprot | Q9SDW0 | 2e-49 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A067JY09 | 1e-146 | A0A067JY09_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0006s10240.1 | 2e-94 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38250.1 | 1e-29 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105646582 |
Publications ? help Back to Top | |||
---|---|---|---|
|