PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04319.10
Common NameGRAS18, JCGZ_04207
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 542aa    MW: 60760.7 Da    PI: 6.1988
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04319.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS402.15.6e-1231735422374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++ L++cA+ +++gd  +a  l+  l++++s +gdp+qRl ay++e+L+ar+  s+s++y+al++ +     ss+ ++++ ++++++P+ +f++  
  Jcr4S04319.10 173 KQILFACAQTIADGDIPRAAGLMHVLEQMVSVSGDPIQRLGAYMLEGLRARVELSGSKIYRALKCDAPV---SSDLMTYMGILFKICPYWRFAYTS 265
                    789****************************************************************98...99999999**************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN  I eave e r+HiiDf+i qG+QW+ L+q+La+Rp+gpp + iTgv++p+s   +   l+ +g++La+fA++++vpfef+  +a +  +l+ 
  Jcr4S04319.10 266 ANAVIREAVEYECRIHIIDFQIAQGTQWMYLIQSLADRPGGPPAICITGVDDPQSAhaRGGGLHIVGQKLASFADSCNVPFEFHD-AAMSGCELQR 360
                    ******************************************************99889999***********************.89999***** PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    e+Lrv+pgEa++Vn+ + lh+++desv++ ++rd++L+lvk+lsPkvv+++eqe+++n+++Fl rf e+leyy+a+f+s++a+ +r++++ri+ E+
  Jcr4S04319.10 361 EHLRVQPGEAVVVNFPYILHHMPDESVNTWNHRDRLLRLVKTLSPKVVTLIEQESNTNTKPFLPRFKETLEYYTAMFESIDAGSSRDDKQRINAEQ 456
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++++r+ivn++acega+r+erhe ++kW+ r+++aGF+++pls+ ++  ++ llr+++ + y ++e++g+l+l+W++ ++ + SaWr
  Jcr4S04319.10 457 HCVARDIVNMIACEGADRVERHELFGKWKLRFNMAGFTQYPLSSLVTGAVRDLLREYS-RNYGLQEKDGALYLCWMNTAMATSSAWR 542
                    **********************************************************.55*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.453146523IPR005202Transcription factor GRAS
PfamPF035142.0E-120173542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MQTSQKHRNS ASIHGFYHQP KEIDPYGLSH IQVLDNNALS DGGSQGTSLS FQSYKEEYFT  60
LESSSATTGF AVYDSPAASV SSKSPFSPQG SHSCLSDPHH SPDNTYGSPM SGSSSASDDN  120
ILMKQKLREL EFMLLGSESD ITSNYNFCFH QSDQLPKWDW TQMVEMIPRL DMKQILFACA  180
QTIADGDIPR AAGLMHVLEQ MVSVSGDPIQ RLGAYMLEGL RARVELSGSK IYRALKCDAP  240
VSSDLMTYMG ILFKICPYWR FAYTSANAVI REAVEYECRI HIIDFQIAQG TQWMYLIQSL  300
ADRPGGPPAI CITGVDDPQS AHARGGGLHI VGQKLASFAD SCNVPFEFHD AAMSGCELQR  360
EHLRVQPGEA VVVNFPYILH HMPDESVNTW NHRDRLLRLV KTLSPKVVTL IEQESNTNTK  420
PFLPRFKETL EYYTAMFESI DAGSSRDDKQ RINAEQHCVA RDIVNMIACE GADRVERHEL  480
FGKWKLRFNM AGFTQYPLSS LVTGAVRDLL REYSRNYGLQ EKDGALYLCW MNTAMATSSA  540
WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-541745426375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3919170.0KM391917.1 Jatropha curcas GRAS18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295632.10.0scarecrow-like protein 13
RefseqXP_012069359.10.0scarecrow-like protein 13 isoform X1
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A067KZI30.0A0A067KZI3_JATCU; GRAS18
STRINGcassava4.1_005028m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]