PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04225.30

Common Name

JCGZ_25180, LOC105629110

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 545aa MW: 60826.1 Da PI: 7.54

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04225.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.9	7.6e-30	56	139	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m++ +r+++lk+plWeevs+k+++ g++rs+k+Ckek+en+ k++k++keg+ +++ + +t+++fdql+ Jcr4S04225.30 56 RWPRQETLALLKIRSDMDSVFRDSSLKGPLWEEVSRKLADLGYNRSAKKCKEKFENVYKYHKRTKEGRTGKS--DGKTYRFFDQLQ 139 8******************************************************************964..5557****98 PP
2	trihelix	104.4	8.2e-33	364	449	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++++++++ k+plWee+s++m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a Jcr4S04225.30 364 RWPKVEVQALIKLRTNLDTKYQENGPKGPLWEEISSRMQKLGYNRSAKRCKEKWENINKYFKKVKESSKRR-PEDSKTCPYFHQLDA 449 8******************************************************************97.9**********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.143	49	113	IPR017877	Myb-like domain
SMART	SM00717	0.018	53	115	IPR001005	SANT/Myb domain
CDD	cd12203	3.52E-25	55	120	No hit	No description
Pfam	PF13837	1.6E-19	55	141	No hit	No description
SMART	SM00717	2.1E-5	361	423	IPR001005	SANT/Myb domain
Pfam	PF13837	2.1E-22	363	450	No hit	No description
CDD	cd12203	4.33E-27	363	428	No hit	No description
PROSITE profile	PS50090	7.619	363	421	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.3E-5	363	420	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MQGDSTNVLA TSAGDTGEVG GAGAATGTGT GSNSSDQDDK SLKVEESERL SYGANRWPRQ 60 ETLALLKIRS DMDSVFRDSS LKGPLWEEVS RKLADLGYNR SAKKCKEKFE NVYKYHKRTK 120 EGRTGKSDGK TYRFFDQLQA LESHHHHLHQ PQSVSSHHHH HHRPPPKPQP ATATATLPCS 180 TSSSTASDEE LQSSGGKRKR KWKDFFEKLT KDVIKKQVVL QNKFLETIER LEQERIAREE 240 AWRLQEMTRI NREHEILIQE RTTAAAKDAA VIAFLQKISG QQNSLQLHSI DIPHSSIFTP 300 AMAPAPAPAP APALVPVPVP VPVPAPAPQS TPPSAVASVP VLTSPDVSRK DDGERAIVMT 360 SSSRWPKVEV QALIKLRTNL DTKYQENGPK GPLWEEISSR MQKLGYNRSA KRCKEKWENI 420 NKYFKKVKES SKRRPEDSKT CPYFHQLDAL YKEKTKTNET GFVHGVNPVL STIDPLMARP 480 EQQWPLQQEN QSETVIEING RDKLDHNNIE DDDEDEDVAT SEEDEGGGGF EVVASKPVAP 540 MGNGE

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MQGDSTNVLA TSAGDTGEVG GAGAATGTGT GSNSSDQDDK SLKVEESERL SYGANRWPRQ  60
ETLALLKIRS DMDSVFRDSS LKGPLWEEVS RKLADLGYNR SAKKCKEKFE NVYKYHKRTK  120
EGRTGKSDGK TYRFFDQLQA LESHHHHLHQ PQSVSSHHHH HHRPPPKPQP ATATATLPCS  180
TSSSTASDEE LQSSGGKRKR KWKDFFEKLT KDVIKKQVVL QNKFLETIER LEQERIAREE  240
AWRLQEMTRI NREHEILIQE RTTAAAKDAA VIAFLQKISG QQNSLQLHSI DIPHSSIFTP  300
AMAPAPAPAP APALVPVPVP VPVPAPAPQS TPPSAVASVP VLTSPDVSRK DDGERAIVMT  360
SSSRWPKVEV QALIKLRTNL DTKYQENGPK GPLWEEISSR MQKLGYNRSA KRCKEKWENI  420
NKYFKKVKES SKRRPEDSKT CPYFHQLDAL YKEKTKTNET GFVHGVNPVL STIDPLMARP  480
EQQWPLQQEN QSETVIEING RDKLDHNNIE DDDEDEDVAT SEEDEGGGGF EVVASKPVAP  540
MGNGE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012066016.1	0.0	trihelix transcription factor GT-2
Swissprot	Q39117	1e-135	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A067LFU7	0.0	A0A067LFU7_JATCU; Uncharacterized protein
STRING	cassava4.1_004089m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-56	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	105629110

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]