PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04149.70 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 568aa MW: 64208.8 Da PI: 6.9082 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.4 | 2.7e-13 | 387 | 433 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h + ErrRR++iN++fe Lr+llP+ K +Ka++L+++ eY+ sL Jcr4S04149.70 387 MHHMISERRRREKINESFEALRKLLPPE-----AKKDKASVLTRTREYLTSL 433 568899*********************6.....599*************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.60E-13 | 384 | 438 | No hit | No description |
PROSITE profile | PS50888 | 16.145 | 384 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-17 | 385 | 454 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-17 | 386 | 451 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.8E-11 | 388 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-14 | 390 | 439 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MDTVFSLISE EDRASHLRSL MEAIGCNYIC LWSYLPEPTR CLYFLDGYYH EENNQASPSS 60 GSLARRLFDE YRREMFFIVN DRVPGMAFIN KQPYRELTES EIGRMASVAV QRQFYREARI 120 KTAVFMGCRS GEIEMGWSRV QMNMEDTLRN WFSEDVPQQS PLAEFSQPMD PNRPSSSSSS 180 LKSLSMDSPE TSPFLFNIPT TPHISELPQD PTLQPIPTTS TAIQQVILRS LQPIQATTTS 240 PLQYSMQCLQ PLQTTATSPL QCSMQSLQPI PSAISPTPHQ QVMHAFALVR NTQLPTQESE 300 DAVMARAILA VLTSPSSSTS SSTPNLRQRA TAFKKYGSLP TTTTATRLAG LHSQSLLKRA 360 INYYRNLTIV RREHMQASRS TPTSSQMHHM ISERRRREKI NESFEALRKL LPPEAKKDKA 420 SVLTRTREYL TSLKAQVAEL SQRNQQLEAQ ALLPAIEITE EVSESSNERV EVRVALVSES 480 TPEGEERIID LQVFVRGGSA NISNIVIGIL EFLKHDRNVN LMSMEATTSA TESRLLNRVI 540 LRLRIEGNEW EESAFQEAVR RIVADLTH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 392 | 397 | ERRRRE |
2 | 393 | 398 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020536340.1 | 0.0 | putative transcription factor bHLH041 | ||||
TrEMBL | A0A067KCA6 | 0.0 | A0A067KCA6_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_026020m | 1e-171 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4150 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 6e-62 | bHLH family protein |