PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04149.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 262aa    MW: 28954.9 Da    PI: 10.0391
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04149.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.6e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l  +v+++G+g Wk I +          R+  ++k++w++
    Jcr4S04149.40  5 KQKWTAEEEEALRAGVAKHGTGKWKNIQKDPEfnpflFARSNIDLKDKWRN 55
                     79****************************9999999779*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.309161IPR017930Myb domain
SuperFamilySSF466898.61E-16258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-14456IPR009057Homeodomain-like
SMARTSM007171.2E-7459IPR001005SANT/Myb domain
PfamPF002492.2E-9555IPR001005SANT/Myb domain
CDDcd116602.69E-20656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKHGTGKWKN IQKDPEFNPF LFARSNIDLK DKWRNMSVSA  60
GGQGLREKSR TQKPKVNSEE PATAVSSPGP LTIVQTSASV ALTKSDPVVD DSSKITVDGK  120
SAPNQSTLVS PFSRVQQRQE VPQNFRRQLS AKLRRLVAQE KLEKVENCYK IKNSPSIGTK  180
IHTPKQKDIQ PRQLQSIGCI TTDDTVEEAA VAAAYRIAEA ENKSFVAAEA VKEAERVSKL  240
AEDADSLVQL AKEILERCKL KF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076950.11e-169telomere repeat-binding factor 4
TrEMBLA0A067KFT21e-168A0A067KFT2_JATCU; Uncharacterized protein
STRINGcassava4.1_013424m1e-120(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-48MYB_related family protein